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@Washington-University WUSM Human Connectome Project

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    35 repositories

    • workbench

      Public
      Connectome Workbench
      c-plus-plusneurosciencemri
      c-plus-plusneurosciencemrinifticiftigifti
      C++
      •
      GNU General Public License v2.0
      •69•222•17•1•Updated May 6, 2026May 6, 2026

    • HCPpipelines

      Public
      Processing pipelines for the HCP
      shellhcphcp-pipelines
      shellhcphcp-pipelines
      Shell
      •
      Other
      •289•645•22•16•Updated May 6, 2026May 6, 2026

    • cifti-matlab

      Public
      MATLAB code for reading and writing CIFTI connectivity files
      matlabciftihcp
      matlabciftihcpfmri-cifti-datacifti-format
      MATLAB
      •
      Other
      •20•70•1•0•Updated Feb 25, 2026Feb 25, 2026

    • wb_shortcuts

      Public
      Script for common short wb_command sequences
      Shell
      •
      MIT License
      •0•2•0•0•Updated Jun 28, 2025Jun 28, 2025

    • gradunwarp

      Public
      Gradient Unwarping in Python
      Python
      •
      Other
      •37•42•5•0•Updated Dec 23, 2024Dec 23, 2024

    • CiftiLib

      Public
      C++ Library for reading and writing CIFTI-2 and CIFTI-1 files
      c-plus-plusnifticifti
      c-plus-plusnifticiftihcpfmri-cifti-datacifti-format
      C++
      •
      BSD 2-Clause "Simplified" License
      •12•16•1•2•Updated Nov 28, 2023Nov 28, 2023

    • BALSA

      Public
      JavaScript
      •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • NHPPipelines

      Public
      Enhancements of HCP Pipelines for non-human primates
      Shell
      •
      Other
      •22•30•6•2•Updated Jul 7, 2022Jul 7, 2022

    • HCPpipelinesXnatPbsJobs

      Public
      Shell
      •2•0•0•0•Updated Nov 13, 2020Nov 13, 2020

    • StructuralQC

      Public
      Shell
      •
      Other
      •3•4•0•0•Updated Nov 2, 2020Nov 2, 2020

    • CHPC_QuNex_RunUtils

      Public
      Scripts and parameters files for running Qu|Nex container on the CHPC
      Shell
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated May 15, 2020May 15, 2020

    • HCPpipelinesXnatSingularity

      Public
      1•1•0•0•Updated May 15, 2020May 15, 2020

    • HCPpipelinesRunUtils

      Public
      Utilities for running and checking completion status of HCP Pipelines
      Shell
      •1•1•0•0•Updated May 15, 2020May 15, 2020

    • HCPpipelinesSingularity

      Public
      Files related to running the HCP Pipelines using Singularity
      Shell
      •
      Other
      •2•1•0•0•Updated Sep 30, 2019Sep 30, 2019

    • HCPpipelinesDocker

      Public
      Files related to running the HCP Pipelines using Docker
      Other
      •3•5•1•0•Updated Mar 15, 2019Mar 15, 2019

    • xnat_pbs_jobs_control

      Public
      Control files for the scripts in the xnat_pbs_jobs repository
      Shell
      •1•0•0•0•Updated Oct 31, 2018Oct 31, 2018

    • xnat_pbs_jobs

      Public
      Scripts to run HCP Pipelines as XNAT aware PBS scheduled jobs
      Shell
      •1•1•0•0•Updated Oct 25, 2018Oct 25, 2018

    • Pipeline_Environment_Setup_Scripts

      Public
      Shell
      •0•0•0•0•Updated Aug 3, 2018Aug 3, 2018

    • at_cmd_utils

      Public
      Utility scripts for the at command
      Shell
      •0•0•0•0•Updated Aug 3, 2018Aug 3, 2018

    • pbs_utils

      Public
      PBS Job Scheduler Utility Scripts
      Shell
      •0•0•0•0•Updated Aug 3, 2018Aug 3, 2018

    • hcp_functional_qc_xnat_plugin

      Public
      XNAT pages required for HCP QC as a plugin
      Java
      •
      Other
      •0•0•0•0•Updated Mar 19, 2018Mar 19, 2018

    • hcp_functional_qc_tools

      Public
      Python based scripts required for Functional QC Pipeline (aka Level2QC Pipeline) for HCP-IntraDB
      Python
      •0•0•0•0•Updated Feb 26, 2018Feb 26, 2018

    • megconnectome

      Public
      MEG data processing pipelines for the HCP Young Adult project
      MATLAB
      •
      GNU General Public License v3.0
      •6•2•0•0•Updated Dec 7, 2017Dec 7, 2017

    • xnat_utilities

      Public
      Some utilities for working with XNAT from the command line
      Python
      •0•2•0•0•Updated Jul 3, 2017Jul 3, 2017

    • monitor-hcp-pipelines

      Public
      Python
      •1•1•0•0•Updated Aug 24, 2016Aug 24, 2016

    • get-data-for-vetting

      Public
      Utility scripts to retrieve data from Connectome DB resources and place them in shared directories for examination and vetting
      Shell
      •0•0•0•0•Updated Jun 21, 2016Jun 21, 2016

    • HCP

      Public
      Main HCP repo, probably mostly python stuff.
      Python
      •3•5•0•1•Updated Apr 6, 2016Apr 6, 2016

    • HAWG-examples

      Public
      HAWG example JSON files
      9•0•0•0•Updated Feb 10, 2016Feb 10, 2016

    • RetinotopySkeleton

      Public
      Shell
      •3•0•0•2•Updated Oct 5, 2015Oct 5, 2015

    • hcp_functional_qc_pipeline_customizations

      Public
      HCP Functional QC (aka Level2QC) pipeline
      Shell
      •2•1•0•0•Updated Jun 24, 2015Jun 24, 2015
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