Skip to content

@abims-sbr ABiMS - Station Biologique de Roscoff - France - CNRS/SU

Change the repository type filter

All

    Repositories list

    27 repositories

    • adaptsearch

      Public
      A pipeline for the search of adaptive mutations and positively selected genes from RNASeq orthologs
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Nov 7, 2025Nov 7, 2025

    • adaptsearch_old

      Public
      A pipeline for the search of adaptive mutations and positively selected genes from RNASeq orthologs
      Python
      •
      GNU General Public License v3.0
      •3•0•5•0•Updated Sep 4, 2025Sep 4, 2025

    • ansible-sequenceserver

      Public
      https://galaxy.ansible.com/abims_sbr/sequenceserver: an Ansible Role that installs SequenceServer on Linux and deploys one NCBI BLAST+ server for each BLAST dat…
      querydatabaseblast
      querydatabaseblastsequencesequenceserver
      Jinja
      •
      MIT License
      •0•0•6•1•Updated Aug 5, 2024Aug 5, 2024

    • docker_slurm_exec

      Public
      Dockerfile
      •2•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • aozan

      Public
      An automated post sequencing data processing pipeline for Illumina HiSeq
      HTML
      •
      Other
      •4•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •348•0•0•0•Updated Jan 17, 2023Jan 17, 2023

    • tripal_linkout

      Public
      The Linkout module provides a web service for generation of external links
      PHP
      •4•0•0•1•Updated Oct 11, 2022Oct 11, 2022

    • shiny_transcriptomic_aggregator_ectocarpus

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•0•3•0•Updated May 30, 2022May 30, 2022

    • ansible-singularity

      Public
      https://galaxy.ansible.com/lecorguille/singularity
      GNU General Public License v3.0
      •8•4•4•5•Updated May 20, 2022May 20, 2022

    • GGA_Cloud

      Public
      These Ansible recipes allow the deployment of a Virtual Machine in an OpenStack cloud via the Terraform software, the installation of the GGA environment and it…
      Jinja
      •0•1•1•0•Updated Apr 29, 2022Apr 29, 2022

    • biomaj-data

      Public
      Sample community db properties and postprocesses
      Perl
      •3•0•0•0•Updated Aug 20, 2021Aug 20, 2021

    • D4_marine_eukaryote_genomics_portal_docker

      Public
      Marine Eukaryote Genomics Portal Docker
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•2•Updated Jan 12, 2021Jan 12, 2021

    • tools-abims

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 8, 2021Jan 8, 2021

    • ansible-gitlab-runner

      Public
      Ansible role to install gitlab-runner (Major update 1.2.0 please verify your jobs!)
      Python
      •
      MIT License
      •301•0•0•0•Updated Nov 19, 2020Nov 19, 2020

    • D4_marine_eukaryote_genomics_portal

      Public
      EOSC-Life Demonstrator 4
      Python
      •1•0•0•0•Updated Sep 23, 2020Sep 23, 2020

    • goslim-analysis

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 27, 2020Jul 27, 2020

    • bioanalyse_protocoles

      Public
      A list of bio-analyse protocoles
      0•0•0•1•Updated Nov 19, 2019Nov 19, 2019

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.8k•0•0•0•Updated Oct 22, 2018Oct 22, 2018

    • WinstonCleaner

      Public
      Python
      •
      Other
      •2•0•0•0•Updated May 29, 2018May 29, 2018

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      Python
      •
      MIT License
      •505•0•0•0•Updated Mar 6, 2018Mar 6, 2018

    • trinityrnaseq

      Public
      Trinity RNA-Seq de novo transcriptome assembly
      Perl
      •
      BSD 3-Clause "New" or "Revised" License
      •320•0•0•0•Updated Feb 23, 2018Feb 23, 2018

    • MCSC_Decontamination

      Public
      Scripts and documentations on the MCSC decontamination method
      Perl
      •2•0•0•0•Updated Sep 29, 2017Sep 29, 2017

    • drap

      Public
      Fork of DRAP (http://www.sigenae.org/drap) modified for ABiMS cluster
      Perl
      •0•2•1•0•Updated Jul 20, 2017Jul 20, 2017

    • HoloVir

      Public
      HoloVir is a robust and flexible data analysis pipeline that provides an optimised and validated workflow for taxonomic and functional characterisation of viral…
      Shell
      •6•0•0•0•Updated Jul 6, 2017Jul 6, 2017

    • training-material

      Public
      A collection of training material from offered Galaxy courses
      HTML
      •
      Other
      •1.1k•0•0•0•Updated Feb 27, 2017Feb 27, 2017

    • galaxy-blastprivate

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 20, 2017Jan 20, 2017

    • galaxy-blastvisu

      Public
      Visualisation for Blast XML outputs under Galaxy
      Mako
      •1•0•4•0•Updated Mar 30, 2016Mar 30, 2016