Repositories list

• ai-gene-review

  Public
  Demonstration of AI review of existing functional annotations

  geneontologyfunctional-annotationmonarchinitiative+ 3

  geneontologyfunctional-annotationmonarchinitiativeagentic-aiclaude-codeai4curation

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •44 forks•2424 stars•167167 issues•1010 pull requests•Updated Jul 12, 2026Jul 12, 2026

• agent-watcher

  Public
  Daily agent quality watcher for deployed repos using GitHub Actions and coding agents

  Python

  •00 forks•11 star•8787 issues•11 pull request•Updated Jul 12, 2026Jul 12, 2026

• aidocs

  Public
  documentationartificial-intelligenceontologies+ 4

  documentationartificial-intelligenceontologiesbiocurationmonarchinitiativeobofoundryai4curation

  Just

  •44 forks•1111 stars•2323 issues•99 pull requests•Updated Jun 16, 2026Jun 16, 2026

• ai4c-scribe

  Public
  Extracts training/evaluation datasets from GitHub repositories by mining pull requests

  evaluationontologiesagents+ 2

  evaluationontologiesagentsai4curationai4c

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•11 issue•66 pull requests•Updated May 31, 2026May 31, 2026

• icbo-ai-tutorial

  Public
  Material for 2025 ICBO AI Tutorial.

  Makefile

  •33 forks•44 stars•4848 issues•1313 pull requests•Updated May 29, 2026May 29, 2026

• eval-ont-agent-cl

  Public
  Shadow repo for AI agent evaluation against obophenotype/cell-ontology. Do not merge eval branches. See ai4curation/ai4c-scribe for tooling.

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•11 issue•381381 pull requests•Updated May 18, 2026May 18, 2026

• eval-ont-agent-go

  Public
  Shadow repo for AI agent evaluation against geneontology/go-ontology. Do not merge eval branches. See ai4curation/ai4c-scribe for tooling.

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•1313 issues•442442 pull requests•Updated May 17, 2026May 17, 2026

• eval-ont-agent-uberon

  Public
  Shadow repo for AI agent evaluation against obophenotype/uberon. Do not merge eval branches. See ai4curation/ai4c-scribe for tooling.

  Emacs Lisp

  •

  Other

  •00 forks•00 stars•11 issue•393393 pull requests•Updated May 17, 2026May 17, 2026

• eval-ont-agent-mondo

  Public
  Shadow repo for AI agent evaluation against monarch-initiative/mondo. Do not merge eval branches. See ai4curation/ai4c-scribe for tooling.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •00 forks•11 star•11 issue•416416 pull requests•Updated May 17, 2026May 17, 2026

• curation-skills

  Public
  Claude skills for a variety of curation and knowledge-based tasks. We currently have 3 skills included, but intend to grow this.

  monarchinitiativeobofoundryagent-skills+ 1

  monarchinitiativeobofoundryagent-skillsai4curation

  HTML

  •11 fork•2424 stars•22 issues•00 pull requests•Updated May 11, 2026May 11, 2026

• mondo-agent-config

  Public
  Agent configuration for ontology eval. See ai4curation/ai4c-scribe.

  Just

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 9, 2026May 9, 2026

• uberon-agent-config

  Public
  Agent configuration for ontology eval. See ai4curation/ai4c-scribe.

  Just

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 9, 2026May 9, 2026

• go-ontology-agent-config

  Public
  Agent configuration for ontology eval. See ai4curation/ai4c-scribe.

  Just

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 9, 2026May 9, 2026

• cl-agent-config

  Public
  Agent configuration for ontology eval. See ai4curation/ai4c-scribe.

  Just

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 9, 2026May 9, 2026

• agentic-trace-analyzer

  Public
  Python

  •00 forks•11 star•11 issue•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• ai-blame

  Public
  Extract provenance/audit trails from AI agent execution traces

  provenanceaudit-trailmonarchinitiative+ 2

  provenanceaudit-trailmonarchinitiativeclaude-codeai4curation

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•66 stars•11 issue•88 pull requests•Updated Apr 12, 2026Apr 12, 2026

• github-ai-integrations

  Public
  Copier template for adding AI integrations to a GH repo

  monarchinitiativeai4curation

  monarchinitiativeai4curation

  Jinja

  •

  MIT License

  •00 forks•1111 stars•44 issues•11 pull request•Updated Feb 13, 2026Feb 13, 2026

• issue-pr-test-repo

  Public
  Synthetic test repository for testing GitHub issues, PRs, and workflows

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 23, 2025Dec 23, 2025

• metacoder

  Public
  Wrapper for multiple AI coders (goose, claude code, codex)

  command-linemcpevaluation+ 3

  command-linemcpevaluationartificial-intelligencecoding-assistantmcp-server

  Python

  •22 forks•2121 stars•2323 issues•88 pull requests•Updated Dec 15, 2025Dec 15, 2025

• ai4curation.github.io

  Public
  main web page

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2025Nov 14, 2025

• ai-gene-curation

  Public archive
  EXPERIMENTAL repo

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•44 pull requests•Updated Aug 13, 2025Aug 13, 2025

• ontoeval

  Public
  Generates and runs evaluation benchmarks for ontology changes

  Python

  •

  MIT License

  •22 forks•22 stars•00 issues•00 pull requests•Updated Jul 8, 2025Jul 8, 2025

• goose-ai-linkml-action

  Public
  github action to trigger goose linkml agent

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 2, 2025Jul 2, 2025

• obi-tutorial

  Public
  The Ontology for Biomedical Investigations (forked for tutorial purposes)

  Python

  •

  Creative Commons Attribution 4.0 International

  •3737 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2025Jun 9, 2025

• robot-mcp

  Public
  A model context protocol server for working with robot OWL templates

  mcpsemantic-webartificial-intelligence+ 4

  mcpsemantic-webartificial-intelligenceweb-ontology-languagemonarchinitiativeobofoundrymcp-server

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2025Jun 9, 2025

• ai-ontology-tutorial

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2025Jun 5, 2025

• owl-mcp

  Public
  MCP server for OWL applications

  aimcpsemantic-web+ 4

  aimcpsemantic-webontologyweb-ontology-languagemonarchinitiativemodel-context-protocol

  Python

  •77 forks•1818 stars•11 issue•11 pull request•Updated Jun 5, 2025Jun 5, 2025

• odk-ai

  Public
  Extension of ODK for AI coding

  artificial-intelligencemonarchinitiativeobofoundry+ 1

  artificial-intelligencemonarchinitiativeobofoundryontology-development-kit

  Shell

  •22 forks•33 stars•1414 issues•22 pull requests•Updated Jun 4, 2025Jun 4, 2025

• ai-mention-detector-action

  Public
  GitHub action for detecting AI mentions

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 4, 2025Jun 4, 2025

• goose-ai-obo-action

  Public
  GitHub action for running goose over obo format repos

  Apache License 2.0

  •00 forks•11 star•11 issue•00 pull requests•Updated Jun 4, 2025Jun 4, 2025