B-Cubed

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29 repositories

b3gbi
Public
B-Cubed General Biodiversity Indicators
biodiversity-indicators data-cubes
biodiversity-indicators data-cubes
R
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Other
•2•8•8•2•Updated Mar 17, 2026Mar 17, 2026
flanders-use-case
Public
In this repository, the B-Cubed workflows are tested for Flanders, a region of Europe where species occurrence data are abundant.
invasive-species indicators flanders
invasive-species indicators flanders quarto-dashboard
HTML
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MIT License
•0•0•12•0•Updated Mar 13, 2026Mar 13, 2026
documentation
Public
B-Cubed documentation website
JavaScript
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Creative Commons Attribution 4.0 International
•4•2•12•4•Updated Mar 11, 2026Mar 11, 2026
dubicube
Public
An R package to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes.
r uncertainty-quantification rpackage
r uncertainty-quantification rpackage uncertainty-visualisation biodiversity-indicators data-cubes
R
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Other
•0•3•12•1•Updated Mar 11, 2026Mar 11, 2026
suitabilitycube
Public
this R package aims to build a cube with metrics that support the analysis of species distribution models
R
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MIT License
•0•0•2•0•Updated Mar 11, 2026Mar 11, 2026
pdindicatoR
Public
Repository for the phylogenetic diversity indicator workflow as part of the B3 project.
r conservation datacube
r conservation datacube phylogenetic-diversity indicator biodiversity
R
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Other
•3•0•23•0•Updated Mar 10, 2026Mar 10, 2026
dissmapr
Public
Workflow for Compositional Dissimilarity and Biodiversity Turnover Analysis
r rstats r-package
r rstats r-package spatiotemporal biodiversity dissimilarity
R
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MIT License
•0•1•2•0•Updated Mar 1, 2026Mar 1, 2026
rsa-unstructured-data-comp
Public
Scripts for analyses that compare unstructured data cubes with structured monitoring schemes in South Africa
r structured-data data-quality
r structured-data data-quality unstructured-data data-cubes
R
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MIT License
•0•0•0•0•Updated Feb 27, 2026Feb 27, 2026
comp-unstructured-data
Public
Scripts to explore the conditions that determine the reliability of models, trends and status by comparing aggregated cubes with structured monitoring schemes
r rstats structured-data
r rstats structured-data data-quality unstructured-data data-cubes
R
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MIT License
•0•2•0•0•Updated Feb 27, 2026Feb 27, 2026
impIndicator
Public
Compute impact indicators of invasive alien species
r impact invasive-species
r impact invasive-species biodiversity-indicators
R
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Other
•0•0•8•0•Updated Feb 24, 2026Feb 24, 2026
muddymetrics
Public
R
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MIT License
•0•0•0•1•Updated Feb 20, 2026Feb 20, 2026
b3gbi-gui
Public
R
•0•0•7•0•Updated Feb 20, 2026Feb 20, 2026
integrate-indicator-software
Public
Scripts to explore the streamlining and integration of software (with focus on R packages) related to the calculation of indicators based on biodiversity data c…
r r-packages biodiversity-indicators
r r-packages biodiversity-indicators data-cubes software-integration software-streamlining
R
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MIT License
•0•0•0•0•Updated Feb 19, 2026Feb 19, 2026
indicator-uncertainty
Public
Scripts to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes
r rstats uncertainty-quantification
r rstats uncertainty-quantification uncertainty-visualisation biodiversity-indicators data-cubes
R
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MIT License
•1•1•1•0•Updated Feb 19, 2026Feb 19, 2026
b3data-scripts
Public
Scripts used to create the frictionless b3data data package
data-package frictionless data-cubes
data-package frictionless data-cubes b3verse
R
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MIT License
•0•0•0•0•Updated Feb 19, 2026Feb 19, 2026
gcube
Public
Simulation framework for biodiversity data cubes
r simulations r-package
r simulations r-package biodiversity-informatics data-cubes
R
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Other
•3•11•7•0•Updated Feb 19, 2026Feb 19, 2026
vscube
Public
Scripts to build suitability data cubes and assess the impact of sampling bias when measuring ecological niche.
R
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Other
•1•1•2•0•Updated Feb 10, 2026Feb 10, 2026
invasimapr
Public
Workflow to visualise trait dispersion and assess invasibility
r rstats r-package
r rstats r-package
R
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Other
•0•1•2•0•Updated Jan 30, 2026Jan 30, 2026
b3doc
Public
r r-package
r r-package
R
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Other
•1•0•1•0•Updated Jan 14, 2026Jan 14, 2026
euroraccoon
Public archive
Generalized Additive Models (GAMs) for raccoon in Europe
biological-data-analysis biodiversity raccoon
biological-data-analysis biodiversity raccoon biodiversity-data
JavaScript
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MIT License
•0•0•0•0•Updated Dec 3, 2025Dec 3, 2025
fowlplay
Public
A notebook to explore the value of sex data buried in the Global Biodiversity Information Facility for ducks
exploratory-data-analysis jupyter-notebook biodiversity-informatics
exploratory-data-analysis jupyter-notebook biodiversity-informatics biodiversity gbif ducks data-quality sex anatidae ornithology
Jupyter Notebook
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MIT License
•1•0•0•0•Updated Nov 16, 2025Nov 16, 2025
b-cubed-eu.r-universe.dev
Public
0•0•1•0•Updated Aug 20, 2025Aug 20, 2025
lps25-demo
Public
Jupyter Notebook
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MIT License
•1•0•0•0•Updated Jun 27, 2025Jun 27, 2025
biospace25-demo
Public
This repository contains the materials related to the B-cubed demo session presented on the BioSpace 2025 conference.
Jupyter Notebook
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MIT License
•1•1•0•0•Updated Jun 5, 2025Jun 5, 2025
b-cubed-workshops
Public
R
•0•1•0•0•Updated May 12, 2025May 12, 2025
griis-eu
Public archive
Workflow to create an EUropean GRIIS checklist based on national GRIIS checklists
MIT License
•0•0•0•0•Updated Apr 2, 2025Apr 2, 2025
hackathon-projects-2024
Public
This space is dedicated to hosting and showcasing all the projects submitted for the B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy
hackathon biodiversity-data datacubes
hackathon biodiversity-data datacubes
Jupyter Notebook
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MIT License
•2•6•0•0•Updated Mar 31, 2025Mar 31, 2025
project9
Public
Species Occurrence Cube Portability @ B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy.
Python
•0•1•0•0•Updated Jul 11, 2024Jul 11, 2024
hackathon-project-7
Public
This space is dedicated to hosting "Project 7 - Interoperable eLTER Standard Observation variables for Biosphere" as part of the B-Cubed Hackathon 2024 - Hackin…
hackathon fair biodiversity-data
hackathon fair biodiversity-data datacubes
Jupyter Notebook
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MIT License
•1•0•0•0•Updated May 21, 2024May 21, 2024