BC Cancer Canada's Michael Smith Genome Sciences Centre

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122 repositories

pori_ipr_client
Public
Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI
bioinformatics genomics personalized-medicine pori
TypeScript
•
GNU General Public License v3.0
•1•8•0•4•Updated Jan 22, 2026Jan 22, 2026
pori_graphkb_loader
Public
The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API
etl pori
JavaScript
•
GNU General Public License v3.0
•4•6•11•2•Updated Jan 20, 2026Jan 20, 2026
pori_graphkb_schema
Public
Shared package between the API and GUI for GraphKB which holds the schema definitions and schema-related functions
genomics graphdb knowledge-base personalized-medicine pori
TypeScript
•
GNU General Public License v3.0
•0•4•0•0•Updated Jan 20, 2026Jan 20, 2026
ntRoot
Public
🌳 Scalable ancestry from genomic data
genome ancestry snv genome-assembly genomic-data-analysis ancestrydna genomic-data ancestry-inference sequencing-data snv-call
Python
•
GNU General Public License v3.0
•0•11•0•0•Updated Jan 16, 2026Jan 16, 2026
ntStat
Public
ntStat: a toolkit for statistical analysis of k-mer frequency and depth
C++
•
GNU General Public License v3.0
•0•2•0•0•Updated Jan 15, 2026Jan 15, 2026
pori_ipr_api
Public
Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform
bioinformatics genomics personalized-medicine pori
JavaScript
•0•8•0•2•Updated Jan 14, 2026Jan 14, 2026
pori_graphkb_client
Public
Front-end web client for the GraphKB project
graphdb knowledge-base genomic personalized-medicine pori
TypeScript
•
GNU General Public License v3.0
•1•9•14•2•Updated Jan 14, 2026Jan 14, 2026
pori
Public
Platform for Oncogenomic Reporting and Interpretation (PORI)
genomics personalized-medicine pori
Shell
•
GNU General Public License v3.0
•8•35•8•1•Updated Jan 10, 2026Jan 10, 2026
pori_python
Public
Python
•
GNU General Public License v3.0
•2•0•1•3•Updated Jan 9, 2026Jan 9, 2026
ntSynt-viz
Public
Multi-genome synteny block visualization tool
Python
•
GNU General Public License v3.0
•4•52•4•0•Updated Jan 7, 2026Jan 7, 2026
ntSynt
Public
Detecting multi-genome synteny using minimizer graph mapping
Python
•
GNU General Public License v3.0
•2•98•4•0•Updated Jan 7, 2026Jan 7, 2026
btl
Public
🔬 Bioinformatics Technology Lab, Genome Sciences Centre
HTML
•3•2•4•2•Updated Dec 29, 2025Dec 29, 2025
pori_graphkb_api
Public
REST API for the GraphKB project
genomics graphdb knowledge-base personalized-medicine pori
JavaScript
•
GNU General Public License v3.0
•1•4•6•0•Updated Dec 19, 2025Dec 19, 2025
btllib
Public
📚Bioinformatics Technology Lab common code library
python library bioinformatics algorithms genome cpp bloom-filter data-structures
C++
•
Other
•6•28•25•9•Updated Dec 17, 2025Dec 17, 2025
straglr
Public
Tandem repeat expansion detection or genotyping from long-read alignments
bioinformatics genomics tandem-repeats long-reads
Python
•
Other
•15•139•31•1•Updated Nov 24, 2025Nov 24, 2025
MAP
Public
📍Microdilution Assay Processor
microbiology 96-well-plate antimicrobial cytotoxicity plate-reader antimicrobial-susecptibility hemolysis
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 19, 2025Nov 19, 2025
goldrush
Public
Linear-time de novo Long Read Assembler
bioinformatics genome-assembly bioinformatics-tool long-read-sequencing
C++
•
GNU General Public License v3.0
•2•41•7•0•Updated Oct 22, 2025Oct 22, 2025
AMPSeek
Public
Anti-microbial property, protein structure and toxicity detection from peptide sequences
Python
•0•0•0•0•Updated Oct 16, 2025Oct 16, 2025
tr_catalog
Public
Tandem repeat catalog from public long-read sequence assemblies
Python
•
Other
•0•1•0•0•Updated Oct 13, 2025Oct 13, 2025
ntEdit
Public
✏️ Genome assembly polishing & SNV detection
c-plus-plus bloom-filter polishing draft-genome variant-detection
C++
•
GNU General Public License v3.0
•10•71•0•1•Updated Oct 3, 2025Oct 3, 2025
Stash
Public
This repository contains the implementation for the Stash data structure
C++
•
GNU General Public License v3.0
•2•4•0•0•Updated Oct 3, 2025Oct 3, 2025
Canadian_Biogenome_Project
Public
This repo contains the pipeline used by the Canadian Biogenome Project (http://earthbiogenome.ca) to generate assemblies
Nextflow
•1•3•1•1•Updated Sep 25, 2025Sep 25, 2025
pori_ipr_python
Public archive
[ARCHIVED] Python adapter for generating reports uploaded to IPR using the PORI platform
deprecated
Python
•
GNU General Public License v3.0
•1•6•0•0•Updated Sep 10, 2025Sep 10, 2025
pori_graphkb_python
Public archive
[ARCHIVED] Python adapter package for querying the GraphKB API
deprecated
Python
•
GNU General Public License v3.0
•1•7•0•0•Updated Sep 10, 2025Sep 10, 2025
RICO
Public
R
•0•0•0•0•Updated Sep 5, 2025Sep 5, 2025
LongStitch
Public
🪡Correct and scaffold assemblies using long reads
Makefile
•
GNU General Public License v3.0
•8•57•2•0•Updated Sep 4, 2025Sep 4, 2025
variant_support_pipeline
Public
Nextflow
•1•0•0•0•Updated Sep 3, 2025Sep 3, 2025
AIEdit
Public
Machine learning on spaced seed hit patterns for assembly polishing
C++
•
GNU General Public License v3.0
•0•0•0•0•Updated Aug 19, 2025Aug 19, 2025
aakomp
Public
Draft genome completeness assessment using k-mer hash based approach
C++
•
GNU General Public License v3.0
•0•2•0•0•Updated Jul 23, 2025Jul 23, 2025
triAMPh
Public
TaRget Identification of AntiMicrobial Peptides with Heterogeneous graph attention networks
Python
•
MIT License
•0•1•0•0•Updated Jul 9, 2025Jul 9, 2025