BigBio Stack
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60 repositories
quantms-test-datasets
Publicmsgf-rust
PublicA rust implementation (vibe code) of the MSGF+ search enginequantmsdiann
Publicquantms-containers
Publichvantk
Public- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
nf-modules
Publiconsite
Publicmokume
Publicpgatk
PublicPython tools for proteogenomics analysis toolkitquantms-rescoring
Publicsdrf-pipelines
PublicSDRF official validator and converts SDRF to pipeline configuration filespyspectrafuse
Publicquantms-utils
PublicA python library with scripts and helpers classes for quantms workflowrawQC
Publicspectrafuse
Publicrelink
Publicsdrf-templates
Publicpmultiqc
PublicA library for QC report based on MultiQC frameworkqpx
Publicsdrf-annotated-datasets
Publicsdrf-skills
PublicAgentic plugins to annotate SDRF using Claude; Codex; Cursor; Geminisdrfedit
Publicquantms
PublicQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quant…pIR
PublicEstimation of isoelectric point of peptides and proteins using support vector machines (SVM).quantms-portal
Publicquantms.org
Publicfslite
PublicLightweight Feature selection Python librarycrosslinking-datasets
Publictechsdrf
Public
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