Biopragmatics Stack
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21 repositories
bioregistry
Public📮 An integrative registry of biological databases, ontologies, and nomenclatures.bioversions
Public🪝 What's the latest version for each database?pyobo
Public📛 A Python package for using ontologies, terminologies, and biomedical nomenclaturessemra
Public🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappingscuries
Public🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Pythonbiomappings
Public🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.mapping-registry
Publicobo-db-ingest
Public🗄️ Conversion of biomedical nomenclatures like HGNC to OBObiolexica
Public📘 Generate and apply coherent biomedical lexical indices for NER and NENbioontologies
Publicbiopragmatics.github.io
PublicGitHub site for the Biopragmatics Stackbiosynonyms
Publico3
Publicoquat
Public🎬 Ontology Quality Assesment Toolkitbiolookup
Public🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.curies.rs
Public.github
Publicdebio
Public🥮 Decentralized Biomedical Ontologyproviders
Publicbioregistry-docker
Public🐋 A dockerfile for the Bioregistry web appbiolookup-docker
Public🐋 A dockerfile for the frontend to the Biolookup Service
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