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@brain-bbqs BRAIN BBQS

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    29 repositories

    • brain-bbq-clone

      Public
      Brain Behavior Quantification & Synchronization (BBQS) Knowledge Graph Main Website
      TypeScript
      •2•4•70•1•Updated Jul 25, 2026Jul 25, 2026

    • bbqs-uploader

      Public
      A fully static, backend-free web app for BBQS teams to upload files to an existing Dandiset on the EMBER Archive through a simple drag-and-drop interface.
      TypeScript
      •
      MIT License
      •0•1•1•0•Updated Jul 23, 2026Jul 23, 2026

    • hearth-landing-page

      Public
      The main landing page for the HEARTH data ecosystem.
      CSS
      •0•1•0•0•Updated Jul 23, 2026Jul 23, 2026

    • data-ingest-task-force

      Public
      Data ingest repository for the Kemere lab.
      Python
      •0•1•0•0•Updated Jul 23, 2026Jul 23, 2026

    • behavioral-annotation-task-force

      Public
      The main official repository for all things related to the Behavioral Annotation Task Force of the BBQS.
      0•2•13•0•Updated Jul 20, 2026Jul 20, 2026

    • bbqs-sink

      Public
      This is a central repository for the BBQS consortium to use to consolidate code snippets and scripts that might be 'generally useful' for others.
      Python
      •
      MIT License
      •0•2•0•1•Updated Jul 6, 2026Jul 6, 2026

    • ingest-tracker

      Public
      The centralized tracker of progress made towards the data and workflow standardization and upload process.
      0•1•37•0•Updated May 18, 2026May 18, 2026

    • .github

      Public
      0•0•0•0•Updated May 13, 2026May 13, 2026

    • reproforce

      Public
      A place for the Task Force for Reproducible and rigorous science to consolidate their public efforts.
      Jupyter Notebook
      •0•1•0•1•Updated May 8, 2026May 8, 2026

    • bbqs-helpdesk

      Public
      A general helpdesk for any and all questions.
      0•1•0•0•Updated Apr 24, 2026Apr 24, 2026

    • ember-pennsieve-helpdesk

      Public
      A centralized public location to ask questions and propose ideas about the EMBER workspace on Pennsieve.
      0•1•0•0•Updated Apr 15, 2026Apr 15, 2026

    • neurodocker

      Public
      Generate custom Docker and Singularity images, and minimize existing containers
      Python
      •
      Apache License 2.0
      •99•1•0•0•Updated Feb 15, 2026Feb 15, 2026

    • brain-bbqs.github.io

      Public archive
      Website for Brain Behavior Quantification and Synchronization
      behaviorbrainconsortium
      behaviorbrainconsortiumnih-brain-initiative
      HTML
      •
      MIT License
      •8•0•12•0•Updated Jan 31, 2026Jan 31, 2026

    • birdnet

      Public
      A Python library for identifying bird species by their sounds.
      Python
      •
      MIT License
      •15•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • simba

      Public
      SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
      Python
      •
      Other
      •179•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • DeepSqueak

      Public
      DeepSqueak v3: Using Machine Vision to Accelerate Bioacoustics Research
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •102•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • BBQS-Resources-Monitoring

      Public template
      ⬆️ GitHub Actions uptime monitor & status page by @AnandChowdhary
      JSON
      •
      MIT License
      •1k•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • bids-validator

      Public
      Validator for the Brain Imaging Data Structure
      TypeScript
      •
      MIT License
      •26•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • DeepLabCut

      Public
      Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
      Python
      •
      GNU Lesser General Public License v3.0
      •1.8k•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • study-template

      Public template
      Template for EMBER study, organized as a BIDS study, for data ingest etc
      Apache License 2.0
      •0•0•2•0•Updated Nov 6, 2025Nov 6, 2025

    • Neurobehavior-Taxonomy-Statuses

      Public template
      Github Actions Systems for Ontology and Taxonomy Monitoring, Collection, and System Designed for Hannah
      Markdown
      •
      MIT License
      •1k•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • labstreaminglayer

      Public
      LabStreamingLayer super repository comprising submodules for LSL and associated apps.
      HTML
      •
      Other
      •193•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • bbqs-kg

      Public
      About This repo contains the code that takes the data gathered using BBQS Bot and construct the KGs
      TypeScript
      •1•0•2•0•Updated Aug 27, 2025Aug 27, 2025

    • bbqs_model_zoo

      Public
      Model Zoo for BBQS Projects
      CSS
      •
      Apache License 2.0
      •0•0•7•1•Updated Feb 14, 2025Feb 14, 2025

    • Sartab

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • gerbil-vocal-dialects

      Public
      Analysis and figure generation code for "Unsupervised discovery of family specific vocal usage in the Mongolian gerbil"
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • OpenFace

      Public
      OpenFace – a state-of-the art tool intended for facial landmark detection, head pose estimation, facial action unit recognition, and eye-gaze estimation.
      MATLAB
      •
      Other
      •1.9k•0•0•0•Updated Jun 1, 2024Jun 1, 2024

    • MARS

      Public
      End-user version of the Mouse Action Recognition System (MARS)
      Python
      •11•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • TREBA

      Public
      Learning trajectory representations using self-supervision and programmatic supervision.
      Python
      •
      Other
      •8•0•0•0•Updated Sep 14, 2022Sep 14, 2022
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