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    20 repositories

    • bam-matcher

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•7•Updated Jun 23, 2026Jun 23, 2026

    • MtbExporter

      Public
      Java
      •
      GNU Affero General Public License v3.0
      •0•2•1•10•Updated Jun 1, 2026Jun 1, 2026

    • MIRACUM-Pipe

      Public
      Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.
      R
      •
      GNU Affero General Public License v3.0
      •15•2•0•0•Updated Mar 21, 2025Mar 21, 2025

    • MMRd

      Public
      Predicting MMR status based on Albayrak et al. (2020)
      R
      •1•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • sequenza

      Public
      :exclamation: This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homepage: https…
      R
      •8•1•0•0•Updated Feb 6, 2024Feb 6, 2024

    • cbioportal-core

      Public
      Legacy cBioPortal Core
      Java
      •31•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • MIRACUM-Pipe-singularity

      Public
      MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of t…
      bioinformaticsngsomics
      bioinformaticsngsomicsomics-pipelineprecision-oncologymedical-informatics-initiativemiracum
      R
      •
      GNU Affero General Public License v3.0
      •1•4•0•0•Updated Oct 24, 2023Oct 24, 2023

    • copynumber

      Public
      R
      •0•0•0•0•Updated Oct 20, 2023Oct 20, 2023

    • vep

      Public
      Recipe for VEP + Cache
      5•2•0•0•Updated Sep 29, 2023Sep 29, 2023

    • HowTos

      Public
      Manuals and examples
      Python
      •1•2•0•0•Updated Sep 22, 2022Sep 22, 2022

    • 2022_canine_atopic_dermatitis_paper

      Public
      R
      •1•1•0•0•Updated Jun 29, 2022Jun 29, 2022

    • bamsnap

      Public
      HTML
      •
      MIT License
      •29•0•0•0•Updated Nov 24, 2021Nov 24, 2021

    • NGS-tools-and-scripts

      Public
      R
      •2•0•0•0•Updated Jan 22, 2021Jan 22, 2021

    • TF_enrichment_analysis

      Public
      COVIDomics paper: Transcription factor activity network
      R
      •3•0•0•0•Updated Nov 13, 2020Nov 13, 2020

    • Egyptref

      Public
      Scripts and pipelines used in the generation of "An Egyptian Genome Reference"
      Perl
      •1•1•0•0•Updated Jun 22, 2020Jun 22, 2020

    • lied_egypt_genome

      Public
      Python
      •2•0•0•0•Updated Jun 19, 2020Jun 19, 2020

    • 2020_population_genetics

      Public
      Python
      •2•0•0•0•Updated Jun 19, 2020Jun 19, 2020

    • awesome-deepbio

      Public
      A curated list of awesome deep learning applications in the field of computational biology
      312•1•0•0•Updated Jul 30, 2018Jul 30, 2018

    • NGS_tools

      Public
      Collection of tools for next generation sequencing analysis
      GNU General Public License v3.0
      •2•0•0•0•Updated May 29, 2018May 29, 2018

    • usefulStuff

      Public
      Collection of useful links
      2•0•0•0•Updated Apr 11, 2018Apr 11, 2018
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