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@calypr CALYPR Data Platform

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    36 repositories

    • status-monitor

      Public
      Status monitor for CALYPR projects 📡
      Markdown
      •
      MIT License
      •0•1•0•0•Updated Jul 14, 2026Jul 14, 2026

    • calypr_etl_pod

      Public
      ETL Worker Pod for the CALYPR data platform
      Python
      •
      MIT License
      •1•2•4•1•Updated Jul 13, 2026Jul 13, 2026

    • git-drs

      Public
      CLI to integrate files from DRS Server into a Git repo [beta]
      Go
      •1•1•15•3•Updated Jul 13, 2026Jul 13, 2026

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Go Template
      •
      Apache License 2.0
      •34•1•21•1•Updated Jul 13, 2026Jul 13, 2026

    • syfon

      Public
      A Modern DRS 1.6 Server ⚡️
      Go
      •
      MIT License
      •0•3•8•3•Updated Jul 10, 2026Jul 10, 2026

    • gecko

      Public
      json configuration fetching, vector database wrapper
      Go
      •
      MIT License
      •0•0•1•1•Updated Jul 10, 2026Jul 10, 2026

    • IDP-Frontend

      Public
      Frontend for CALYPR platform
      TypeScript
      •
      Apache License 2.0
      •0•1•0•1•Updated Jul 10, 2026Jul 10, 2026

    • funnel

      Public
      Funnel is a toolkit for distributed task execution via a simple, standard API.
      dockerkubernetesgoogle-cloud
      dockerkubernetesgoogle-cloudslurmgridenginega4ghaws-batchpbs-torque
      Go
      •
      MIT License
      •43•141•133•6•Updated Jul 9, 2026Jul 9, 2026

    • calypr-cli

      Public
      Calypr Command Line Interface
      Go
      •
      Apache License 2.0
      •0•1•1•1•Updated Jul 1, 2026Jul 1, 2026

    • helm-charts

      Public
      Helm Charts for deploying various projects in Kubernetes!
      Go Template
      •1•1•0•1•Updated Jun 27, 2026Jun 27, 2026

    • resource-editor

      Public
      Display/Edit arbitrary FHIR resource
      TypeScript
      •0•1•2•0•Updated Jun 25, 2026Jun 25, 2026

    • df-agile-spike

      Public
      Explore different alternatives to store graphs and render dataframes
      Python
      •0•0•4•0•Updated Jun 18, 2026Jun 18, 2026

    • forge

      Public
      Metadata handling for CALPYR data platform
      Go
      •0•1•4•0•Updated Jun 16, 2026Jun 16, 2026

    • fence

      Public
      AuthN/AuthZ OIDC Service
      Python
      •
      Apache License 2.0
      •49•0•1•1•Updated Jun 16, 2026Jun 16, 2026

    • arborist

      Public
      Gen3 policy engine
      Go
      •
      Apache License 2.0
      •19•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • calypr.github.io

      Public
      Documentation Site for the CALYPR data system ⚙️
      visualizationplatformdata-science
      visualizationplatformdata-sciencegenomicsworkflowsbiomedical
      Makefile
      •
      Apache License 2.0
      •1•1•22•4•Updated Jun 15, 2026Jun 15, 2026

    • redcap-fhir

      Public
      A POC using redcap to edit FHIR resources
      PHP
      •0•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • calypr-ux-ideas

      Public
      HTML
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • registrations-test

      Public
      Gitops driven Calypr Project Manifests
      0•0•0•2•Updated Jun 3, 2026Jun 3, 2026

    • test-service

      Public
      Testing framework/service for the CALYPR system 🐛
      Apache License 2.0
      •0•0•0•1•Updated Jun 3, 2026Jun 3, 2026

    • .github

      Public template
      GitHub organization respoitory
      0•1•0•0•Updated May 28, 2026May 28, 2026

    • py-tes

      Public
      Python SDK for the GA4GH Task Execution API
      Python
      •
      MIT License
      •12•6•18•1•Updated May 26, 2026May 26, 2026

    • nf-ga4gh

      Public
      GA4GH plugin for Nextflow
      Java
      •
      Apache License 2.0
      •6•1•0•1•Updated May 7, 2026May 7, 2026

    • image_viewer

      Public
      create urls for image viewer, coverts object_id to signed url
      Python
      •
      MIT License
      •0•0•6•2•Updated May 5, 2026May 5, 2026

    • git-lfs-drs

      Public
      Git extension for versioning large files
      Go
      •
      Other
      •2.2k•0•0•2•Updated Apr 30, 2026Apr 30, 2026

    • drs-s3-ingest-browser

      Public
      prototype drs registration component
      TypeScript
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • funnel-gen3-plugin

      Public
      Golang Plugin development + testing using Hashicorp go-plugin package
      Go
      •
      Apache License 2.0
      •2•1•0•0•Updated Apr 11, 2026Apr 11, 2026

    • argo-helm

      Public
      An umbrella chart that installs **Argo Workflows**, **Argo CD**, and fence **authz-adapter**
      Python
      •
      Other
      •0•1•18•4•Updated Jan 6, 2026Jan 6, 2026

    • backup-service

      Public
      Data backup and recovery service for the CALYPR systems 🔄
      Python
      •
      Apache License 2.0
      •0•1•2•0•Updated Jan 5, 2026Jan 5, 2026

    • nextflow-hello-project

      Public
      Example repo for testing calypr/argo-helm
      Nextflow
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 18, 2025Nov 18, 2025
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