Skip to content

@catalystneuro CatalystNeuro

Change the repository type filter

All

    Repositories list

    217 repositories

    • neuroconv

      Public
      Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •32•71•109•25•Updated Nov 29, 2025Nov 29, 2025

    • IBL-mesoscope-to-nwb

      Public
      NWB Conversion project for IBL mesoscope dataset
      Jupyter Notebook
      •
      MIT License
      •0•0•1•0•Updated Nov 29, 2025Nov 29, 2025

    • ndx-spatial-transformation

      Public
      NWB extension for storing spatial landmarks and spatial transformations in neuroimaging data. Enables standardized representation of anatomical landmarks with their pixel coordinates in both original and registered image spaces, along with the associated rotation, translation, and scaling parameters used for spatial registration.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Nov 28, 2025Nov 28, 2025

    • IBL-widefield-to-nwb

      Public
      NWB Conversion project for the IBL widefield dataset
      Python
      •
      MIT License
      •0•0•4•4•Updated Nov 28, 2025Nov 28, 2025

    • dandi-docusaurus-example

      Public
      example of website using docusaurus
      TypeScript
      •
      MIT License
      •0•0•0•5•Updated Nov 27, 2025Nov 27, 2025

    • roiextractors

      Public
      Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•15•25•9•Updated Nov 26, 2025Nov 26, 2025

    • ndx-anatomical-localization

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•4•4•Updated Nov 26, 2025Nov 26, 2025

    • turner-lab-to-nwb

      Public
      NWB Conversion project for the Turner lab at the University of Pittsburgh.
      Python
      •
      MIT License
      •0•0•3•2•Updated Nov 26, 2025Nov 26, 2025

    • schwerdt-lab-to-nwb

      Public
      NWB Conversion project for the Schwerdt lab at University of Pittsburgh.
      Jupyter Notebook
      •
      MIT License
      •0•0•2•1•Updated Nov 26, 2025Nov 26, 2025

    • IBL-to-nwb

      Public
      Conversion of IBL data to NWB format.
      nwb-conversion
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•3•9•3•Updated Nov 24, 2025Nov 24, 2025

    • hnasko-lab-to-nwb

      Public
      NWB Conversion project for the Hnasko Lab
      Jupyter Notebook
      •
      MIT License
      •0•0•1•1•Updated Nov 24, 2025Nov 24, 2025

    • catalystneuro.github.io

      Public
      TypeScript
      •0•0•0•4•Updated Nov 24, 2025Nov 24, 2025

    • woodcode

      Public
      A python package for neural data analysis in Wood/Dudchenko lab
      Python
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Nov 13, 2025Nov 13, 2025

    • kind-lab-to-nwb

      Public
      NWB Conversion project for the Kind lab.
      Jupyter Notebook
      •
      MIT License
      •2•1•5•1•Updated Nov 12, 2025Nov 12, 2025

    • example-notebooks

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •17•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • meletis-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 5, 2025Nov 5, 2025

    • ndx-fscv

      Public
      This NWB extension defines data types for Fast-Scan Cyclic Voltammetry (FSCV), a neurochemical recording technique. It supports storing the applied triangular ramp waveform, measured electrochemical current, and derived cyclic voltammograms used to study dopamine and other neuromodulator dynamics.
      Python
      •
      MIT License
      •0•0•3•0•Updated Nov 4, 2025Nov 4, 2025

    • claude-skills

      Public
      Public repository of skills for neurophysiology research
      MIT License
      •0•0•0•0•Updated Nov 2, 2025Nov 2, 2025

    • agent-foundational-studies

      Public
      Runs of a coding agent attempting to reproduce foundational studies in neurophysiology
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 29, 2025Oct 29, 2025

    • pagan-lab-to-nwb

      Public
      NWB Conversion project for the Pagan lab.
      Jupyter Notebook
      •
      MIT License
      •0•0•1•1•Updated Oct 28, 2025Oct 28, 2025

    • probeinterface

      Public
      Python package to handle probe layout, geometry and wiring to device.
      Python
      •
      MIT License
      •47•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • khaliq-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Oct 24, 2025Oct 24, 2025

    • hdmf

      Public
      The Hierarchical Data Modeling Framework
      Python
      •
      Other
      •25•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • cai-lab-to-nwb

      Public
      NWB Conversion project for the Cai lab
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Oct 21, 2025Oct 21, 2025

    • cookiecutter-my-lab-to-nwb-template

      Public
      The standard cookiecutter template for all lab-specific NWB conversions.
      Python
      •
      MIT License
      •1•2•4•1•Updated Oct 21, 2025Oct 21, 2025

    • ndx-binned-spikes

      Public
      NWB extension to store binned spikes (e.g. a non averaged PSTH) with respect to an time events
      Python
      •
      MIT License
      •0•0•1•0•Updated Oct 20, 2025Oct 20, 2025

    • spyglass

      Public
      Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
      Jupyter Notebook
      •
      MIT License
      •52•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • dandi-annotations

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•4•Updated Oct 7, 2025Oct 7, 2025

    • nwbinspector

      Public
      Tool to help inspect NWB files for compliance with NWB Best Practices
      Python
      •
      Other
      •11•0•0•0•Updated Oct 6, 2025Oct 6, 2025

    • dan-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•1•1•Updated Oct 3, 2025Oct 3, 2025