Repositories list

• cytoscape.js-dagre

  Public
  The Dagre layout for DAGs and trees for Cytoscape.js

  cytoscapejscytoscapejs-extension

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •8181 forks•282282 stars•22 issues•55 pull requests•Updated Jun 29, 2026Jun 29, 2026

• appstore

  Public
  Cytoscape App Store web application code

  Python

  •2525 forks•2020 stars•3333 issues•1818 pull requests•Updated Jun 29, 2026Jun 29, 2026

• cytoscape.js

  Public
  Graph theory (network) library for visualisation and analysis

  visualizationjavascriptanalysis+ 4

  visualizationjavascriptanalysisnetworkvisualisationgraph-theorycytoscapejs

  JavaScript

  •

  MIT License

  •1.7k1.7k forks•11k11k stars•1111 issues•22 pull requests•Updated Jun 29, 2026Jun 29, 2026

• mcode-cw-app

  Public
  MCODE App for Cytoscape Web

  TypeScript

  •

  GNU Lesser General Public License v2.1

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2026Jun 26, 2026

• cytoscape-web

  Public
  A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workfl…

  systems-biologydata-visualizationcytoscape+ 2

  systems-biologydata-visualizationcytoscapenetwork-analysisnetwork-biology

  TypeScript

  •

  MIT License

  •1919 forks•3232 stars•1414 issues•55 pull requests•Updated Jun 23, 2026Jun 23, 2026

• cytoscape-tutorials

  Public
  Collection of modular Cytoscape tutorials for online presentation using reveal.js

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •117117 forks•329329 stars•2626 issues•1313 pull requests•Updated Jun 22, 2026Jun 22, 2026

• cytoscape.github.com

  Public
  Cytoscape org web site.

  HTML

  •1414 forks•2222 stars•00 issues•00 pull requests•Updated Jun 22, 2026Jun 22, 2026

• cytoscape-home

  Public
  JavaScript

  •

  MIT License

  •44 forks•11 star•77 issues•33 pull requests•Updated Jun 18, 2026Jun 18, 2026

• js4cytoscape

  Public
  JavaScript library for calling Cytoscape Automation via CyREST

  JavaScript

  •

  MIT License

  •44 forks•44 stars•11 issue•11 pull request•Updated Jun 16, 2026Jun 16, 2026

• cy-ndex-2

  Public
  A Cytoscape client app for the NDEx database

  Java

  •

  MIT License

  •22 forks•00 stars•1919 issues•33 pull requests•Updated Jun 13, 2026Jun 13, 2026

• cytoscape.js-pdf-export

  Public
  PDF export extension for Cytoscape.js

  JavaScript

  •

  MIT License

  •00 forks•22 stars•33 issues•00 pull requests•Updated Jun 12, 2026Jun 12, 2026

• cx

  Public
  CX serialization and de-serialization in Cytoscape

  Java

  •00 forks•33 stars•99 issues•11 pull request•Updated Jun 6, 2026Jun 6, 2026

• cytoscape-desktop-mcp

  Public
  App which provides an MCP server for integration of desktop with agents

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•66 stars•22 issues•00 pull requests•Updated Jun 3, 2026Jun 3, 2026

• cytoscape-desktop-website

  Public
  The new "Cytoscape Desktop" website

  JavaScript

  •

  MIT License

  •00 forks•00 stars•22 issues•00 pull requests•Updated Jun 2, 2026Jun 2, 2026

• cytoscape-impl

  Public
  Cytoscape 3 implementation bundles.

  Java

  •

  GNU Lesser General Public License v2.1

  •4040 forks•4343 stars•00 issues•00 pull requests•Updated May 27, 2026May 27, 2026

• cytoscape-web-app-examples

  Public
  (Experimental) Example apps for Cytoscape Web

  TypeScript

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• cytoscape-automation

  Public
  Collection of scripts that include programmatic io and control of Cytoscape

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •5959 forks•9292 stars•1313 issues•1010 pull requests•Updated May 21, 2026May 21, 2026

• cytoscape.js-euler

  Public
  Euler is a fast, high-quality force-directed (physics simulation) layout for Cytoscape.js

  JavaScript

  •

  MIT License

  •2323 forks•3232 stars•00 issues•00 pull requests•Updated May 5, 2026May 5, 2026

• cytoscape-api

  Public
  Cytoscape 3 API bundles.

  Java

  •

  GNU Lesser General Public License v2.1

  •3333 forks•2727 stars•00 issues•11 pull request•Updated May 2, 2026May 2, 2026

• cytocontainer-rest-server

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• iregulon-webapp

  Public
  JavaScript

  •

  MIT License

  •00 forks•11 star•1515 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• cytoscape.js-klay

  Public
  The Klay layout algorithm for Cytoscape.js

  JavaScript

  •

  MIT License

  •4141 forks•100100 stars•00 issues•55 pull requests•Updated Apr 10, 2026Apr 10, 2026

• cytoscape.js-cola

  Public
  The Cola.js physics simulation layout for Cytoscape.js

  cytoscapejscytoscapejs-extension

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •6767 forks•170170 stars•00 issues•44 pull requests•Updated Apr 10, 2026Apr 10, 2026

• cytoscape.js-elk

  Public
  The ELK layout algorithm adapter for Cytoscape.js

  JavaScript

  •

  MIT License

  •2929 forks•5656 stars•00 issues•11 pull request•Updated Apr 10, 2026Apr 10, 2026

• cytoscape.js-popper

  Public
  A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

  JavaScript

  •

  MIT License

  •2222 forks•105105 stars•00 issues•44 pull requests•Updated Apr 10, 2026Apr 10, 2026

• cytoscape.js-automove

  Public
  An extension for Cytoscape.js that automatically updates node positions based on specified rules

  cytoscapejscytoscapejs-extension

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •88 forks•3636 stars•00 issues•55 pull requests•Updated Apr 10, 2026Apr 10, 2026

• cytoscape.js-compound-drag-and-drop

  Public
  Compound node drag-and-drop UI for adding and removing children

  JavaScript

  •

  MIT License

  •1515 forks•3333 stars•00 issues•66 pull requests•Updated Apr 10, 2026Apr 10, 2026

• cytoscape.js-cxtmenu

  Public
  Context menu for Cytoscape.js

  cytoscapejscytoscapejs-extension

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •7878 forks•180180 stars•00 issues•44 pull requests•Updated Apr 10, 2026Apr 10, 2026

• ipycytoscape

  Public
  A Cytoscape Jupyter widget

  binderjupyter-notebookcytoscape

  binderjupyter-notebookcytoscape

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6161 forks•289289 stars•6060 issues•1414 pull requests•Updated Apr 6, 2026Apr 6, 2026

• network-ptm-integration

  Public
  This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).

  R

  •

  MIT License

  •00 forks•00 stars•77 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026