Repositories list

• awesome-parasite

  Public
  A curated list of host-parasite information

  awesomeawesome-listeha-modeling-analytics

  awesomeawesome-listeha-modeling-analytics

  Other

  •44 forks in ecohealthalliance/awesome-parasite•6464 stars in ecohealthalliance/awesome-parasite•1010 issues in ecohealthalliance/awesome-parasite•00 pull requests in ecohealthalliance/awesome-parasite•Updated May 28, 2026May 28, 2026

• SADSr-CoVs

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  Code to perform species distribution modeling for Latinne et al. "Diversity and spillover risk of Swine Acute Diarrhea Syndrome and related coronaviruses in Chi…

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  •11 fork in ecohealthalliance/SADSr-CoVs•00 stars in ecohealthalliance/SADSr-CoVs•00 issues in ecohealthalliance/SADSr-CoVs•00 pull requests in ecohealthalliance/SADSr-CoVs•Updated May 28, 2025May 28, 2025

• acdc-db-handbook

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  Africa CDC Database Handbook

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  •22 forks in ecohealthalliance/acdc-db-handbook•11 star in ecohealthalliance/acdc-db-handbook•77 issues in ecohealthalliance/acdc-db-handbook•00 pull requests in ecohealthalliance/acdc-db-handbook•Updated Mar 25, 2025Mar 25, 2025

• eha-ma-handbook

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  EcoHealth Alliance Modeling & Analytics Handbook

  eha-modeling-analyticseha-training

  eha-modeling-analyticseha-training

  HTML

  •1515 forks in ecohealthalliance/eha-ma-handbook•55 stars in ecohealthalliance/eha-ma-handbook•4646 issues in ecohealthalliance/eha-ma-handbook•00 pull requests in ecohealthalliance/eha-ma-handbook•Updated Mar 20, 2025Mar 20, 2025

• ecohealthalliance.r-universe.dev

  Public
  An R-Universe for EcoHealth Alliance Packages

  MIT License

  •00 forks in ecohealthalliance/ecohealthalliance.r-universe.dev•11 star in ecohealthalliance/ecohealthalliance.r-universe.dev•00 issues in ecohealthalliance/ecohealthalliance.r-universe.dev•00 pull requests in ecohealthalliance/ecohealthalliance.r-universe.dev•Updated Mar 1, 2025Mar 1, 2025

• acdc-next-steps

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  Africa CDC One Health Database Next Steps

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  •11 fork in ecohealthalliance/acdc-next-steps•22 stars in ecohealthalliance/acdc-next-steps•00 issues in ecohealthalliance/acdc-next-steps•00 pull requests in ecohealthalliance/acdc-next-steps•Updated Nov 26, 2024Nov 26, 2024

• ehallm

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  What the Package Does (Title Case)

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  •11 fork in ecohealthalliance/ehallm•11 star in ecohealthalliance/ehallm•11 issue in ecohealthalliance/ehallm•00 pull requests in ecohealthalliance/ehallm•Updated Nov 7, 2024Nov 7, 2024

• github-archive

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  organizational archive for github

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  MIT License

  •00 forks in ecohealthalliance/github-archive•11 star in ecohealthalliance/github-archive•00 issues in ecohealthalliance/github-archive•00 pull requests in ecohealthalliance/github-archive•Updated Sep 18, 2024Sep 18, 2024

• serology_methods_sims

  Public
  R

  •00 forks in ecohealthalliance/serology_methods_sims•11 star in ecohealthalliance/serology_methods_sims•00 issues in ecohealthalliance/serology_methods_sims•00 pull requests in ecohealthalliance/serology_methods_sims•Updated Sep 12, 2024Sep 12, 2024

• rig-slides

  Public
  R

  •00 forks in ecohealthalliance/rig-slides•00 stars in ecohealthalliance/rig-slides•00 issues in ecohealthalliance/rig-slides•00 pull requests in ecohealthalliance/rig-slides•Updated Sep 4, 2024Sep 4, 2024

• hotspots2

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  This code powers the models for the paper "Global hotspots and correlates of emerging zoonotic diseases".

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  Apache License 2.0

  •33 forks in ecohealthalliance/hotspots2•77 stars in ecohealthalliance/hotspots2•00 issues in ecohealthalliance/hotspots2•00 pull requests in ecohealthalliance/hotspots2•Updated Jun 28, 2024Jun 28, 2024

• repel2

  Public
  REPEL2

  HTML

  •00 forks in ecohealthalliance/repel2•00 stars in ecohealthalliance/repel2•1515 issues in ecohealthalliance/repel2•00 pull requests in ecohealthalliance/repel2•Updated Jun 26, 2024Jun 26, 2024

• sabrenetfunctions

  Public
  Package for some functions for sabrenet data download, cleaning, summarizing, etc used across sabrenet repositories

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  Other

  •00 forks in ecohealthalliance/sabrenetfunctions•00 stars in ecohealthalliance/sabrenetfunctions•00 issues in ecohealthalliance/sabrenetfunctions•00 pull requests in ecohealthalliance/sabrenetfunctions•Updated Jun 17, 2024Jun 17, 2024

• wahisdb

  Public
  R

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  MIT License

  •00 forks in ecohealthalliance/wahisdb•33 stars in ecohealthalliance/wahisdb•66 issues in ecohealthalliance/wahisdb•00 pull requests in ecohealthalliance/wahisdb•Updated Jun 12, 2024Jun 12, 2024

• slurm-containerized-hpc-environment

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  The goal of this project is to outline the strategies for integrating Simple Linux Utility for Resource Management(SLURM) into our existing High-Performance Com…

  Shell

  •00 forks in ecohealthalliance/slurm-containerized-hpc-environment•00 stars in ecohealthalliance/slurm-containerized-hpc-environment•22 issues in ecohealthalliance/slurm-containerized-hpc-environment•00 pull requests in ecohealthalliance/slurm-containerized-hpc-environment•Updated May 29, 2024May 29, 2024

• slurm-eh-server

  Public
  Shell

  •00 forks in ecohealthalliance/slurm-eh-server•00 stars in ecohealthalliance/slurm-eh-server•00 issues in ecohealthalliance/slurm-eh-server•00 pull requests in ecohealthalliance/slurm-eh-server•Updated Apr 16, 2024Apr 16, 2024

• pubcrawler

  Public
  PubCrawler uses the EpiTator framework (known at time of writing as Annie) to resolve toponyms in the PubMed Central Open Access Subset. It was used to create t…

  Jupyter Notebook

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  Apache License 2.0

  •33 forks in ecohealthalliance/pubcrawler•55 stars in ecohealthalliance/pubcrawler•00 issues in ecohealthalliance/pubcrawler•22 pull requests in ecohealthalliance/pubcrawler•Updated Apr 8, 2024Apr 8, 2024

• eidr

  Public
  CoffeeScript

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  Apache License 2.0

  •00 forks in ecohealthalliance/eidr•11 star in ecohealthalliance/eidr•1313 issues in ecohealthalliance/eidr•11 pull request in ecohealthalliance/eidr•Updated Apr 8, 2024Apr 8, 2024

• containerTemplateUtils

  Public
  A set of utility functions for working with the container-template-repo template

  awsrgithub-actions

  awsrgithub-actions

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  Other

  •33 forks in ecohealthalliance/containerTemplateUtils•22 stars in ecohealthalliance/containerTemplateUtils•1212 issues in ecohealthalliance/containerTemplateUtils•00 pull requests in ecohealthalliance/containerTemplateUtils•Updated Mar 29, 2024Mar 29, 2024

• mclustAddonsEHA

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  A customized fork of mclustAddons

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  •11 fork in ecohealthalliance/mclustAddonsEHA•00 stars in ecohealthalliance/mclustAddonsEHA•00 issues in ecohealthalliance/mclustAddonsEHA•00 pull requests in ecohealthalliance/mclustAddonsEHA•Updated Feb 21, 2024Feb 21, 2024

• eh-server-workflow-run

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  Outlines how you can run various analytic workflows on EHA infrastructure

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  MIT License

  •00 forks in ecohealthalliance/eh-server-workflow-run•11 star in ecohealthalliance/eh-server-workflow-run•88 issues in ecohealthalliance/eh-server-workflow-run•00 pull requests in ecohealthalliance/eh-server-workflow-run•Updated Feb 13, 2024Feb 13, 2024

• building-blocks-of-reproducibility

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  A series of presentations on creating reproducible workflows

  reproducible-researchreproducible-sciencereproducibility

  reproducible-researchreproducible-sciencereproducibility

  HTML

  •55 forks in ecohealthalliance/building-blocks-of-reproducibility•00 stars in ecohealthalliance/building-blocks-of-reproducibility•88 issues in ecohealthalliance/building-blocks-of-reproducibility•00 pull requests in ecohealthalliance/building-blocks-of-reproducibility•Updated Feb 12, 2024Feb 12, 2024

• targets-mermaid-test

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  Test for Target Version and Mermaid Rendering Issues

  HTML

  •00 forks in ecohealthalliance/targets-mermaid-test•11 star in ecohealthalliance/targets-mermaid-test•00 issues in ecohealthalliance/targets-mermaid-test•00 pull requests in ecohealthalliance/targets-mermaid-test•Updated Feb 7, 2024Feb 7, 2024

• RPostgres

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  Temporary fork for testing Dolt/Doltgres compatibility

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  Other

  •8181 forks in ecohealthalliance/RPostgres•00 stars in ecohealthalliance/RPostgres•00 issues in ecohealthalliance/RPostgres•00 pull requests in ecohealthalliance/RPostgres•Updated Jan 3, 2024Jan 3, 2024

• ehaproj-template

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  HTML

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  Other

  •22 forks in ecohealthalliance/ehaproj-template•11 star in ecohealthalliance/ehaproj-template•00 issues in ecohealthalliance/ehaproj-template•00 pull requests in ecohealthalliance/ehaproj-template•Updated Dec 25, 2023Dec 25, 2023

• WABNet-spatial

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  Code used to produce figures in final report for WABNet project

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  •11 fork in ecohealthalliance/WABNet-spatial•11 star in ecohealthalliance/WABNet-spatial•00 issues in ecohealthalliance/WABNet-spatial•00 pull requests in ecohealthalliance/WABNet-spatial•Updated Dec 19, 2023Dec 19, 2023

• gheri_eucom

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  Repo for FY'19 GHERI EUCOM project mapping ecological factors that my play a role in EID emergence and spread

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  •11 fork in ecohealthalliance/gheri_eucom•00 stars in ecohealthalliance/gheri_eucom•00 issues in ecohealthalliance/gheri_eucom•00 pull requests in ecohealthalliance/gheri_eucom•Updated Dec 17, 2023Dec 17, 2023

• git2r

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  R bindings to the libgit2 library

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  GNU General Public License v2.0

  •6161 forks in ecohealthalliance/git2r•11 star in ecohealthalliance/git2r•00 issues in ecohealthalliance/git2r•00 pull requests in ecohealthalliance/git2r•Updated Nov 29, 2023Nov 29, 2023

• mclustEHA

  Public
  A Customized Fork of mclust

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  •1717 forks in ecohealthalliance/mclustEHA•00 stars in ecohealthalliance/mclustEHA•00 issues in ecohealthalliance/mclustEHA•00 pull requests in ecohealthalliance/mclustEHA•Updated Nov 17, 2023Nov 17, 2023

• module-system-llama

  Public
  Setting access for user to run llama.cpp models for their work as a module system

  00 forks in ecohealthalliance/module-system-llama•00 stars in ecohealthalliance/module-system-llama•00 issues in ecohealthalliance/module-system-llama•00 pull requests in ecohealthalliance/module-system-llama•Updated Oct 25, 2023Oct 25, 2023