Skip to content

@flatironinstitute Flatiron Institute

Change the repository type filter

All

    Repositories list

    218 repositories

    • finufft

      Public
      Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
      C++
      •
      Other
      •97•391•49•3•Updated Dec 26, 2025Dec 26, 2025

    • nemos

      Public
      NEural MOdelS, a statistical modeling framework for neuroscience.
      Python
      •
      MIT License
      •14•115•131•4•Updated Dec 24, 2025Dec 24, 2025

    • jaxmg

      Public
      jaxmg: A distributed linear solver in JAX with cuSolverMg
      distributed-computingcudajax
      Jupyter Notebook
      •
      Apache License 2.0
      •1•15•0•0•Updated Dec 23, 2025Dec 23, 2025

    • clair

      Public
      Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ
      C++
      •
      Apache License 2.0
      •3•18•3•4•Updated Dec 22, 2025Dec 22, 2025

    • dmk

      Public
      A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution
      C++
      •4•14•12•1•Updated Dec 19, 2025Dec 19, 2025

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      calcium-imagingmotion-correctionsource-extractiondeconvolution2-photoncnmf
      Python
      •
      GNU General Public License v2.0
      •394•705•79•12•Updated Dec 18, 2025Dec 18, 2025

    • stan-playground

      Public
      Run Stan models in the browser
      wasmlivestanstan-playground
      TypeScript
      •
      Apache License 2.0
      •1•54•11•1•Updated Dec 18, 2025Dec 18, 2025

    • aLENS_analysis

      Public
      Postprocessing & analysis scripts for aLENS data
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • figpack

      Public
      A Python package for creating shareable, interactive, browser-based visualizations
      pypilivefigpack
      TypeScript
      •
      Apache License 2.0
      •0•15•3•0•Updated Dec 18, 2025Dec 18, 2025

    • DeterminantRatioMatrix

      Public
      Jupyter Notebook
      •1•2•3•0•Updated Dec 17, 2025Dec 17, 2025

    • scc-viswall-prom

      Public
      Generates plots of cluster usage data for the Flatiron viswall by scraping Prometheus
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • jax-finufft

      Public
      JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
      C++
      •
      Apache License 2.0
      •10•108•9•2•Updated Dec 17, 2025Dec 17, 2025

    • spack-packages

      Public
      Spack's community package recipes
      Python
      •
      Apache License 2.0
      •493•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • sciware

      Public
      Learning materials for scientific software development
      learningscienceeducationsoftware-development
      HTML
      •38•92•2•0•Updated Dec 15, 2025Dec 15, 2025

    • c2py

      Public
      Clair/c2py low level library
      C++
      •
      Apache License 2.0
      •1•5•0•4•Updated Dec 15, 2025Dec 15, 2025

    • ccq-software-build

      Public
      CCQ software build scripts
      Shell
      •6•12•0•0•Updated Dec 15, 2025Dec 15, 2025

    • cryoSBI

      Public
      Python
      •2•13•15•2•Updated Dec 15, 2025Dec 15, 2025

    • walnuts

      Public
      Within-orbit Adaptive Leapfrog No-U-Turn Sampler
      samplingstanmcmchmc
      C++
      •
      MIT License
      •1•34•9•2•Updated Dec 14, 2025Dec 14, 2025

    • nixpack

      Public
      nix+spack = nixpack (spanix?)
      Nix
      •
      MIT License
      •6•49•2•4•Updated Dec 11, 2025Dec 11, 2025

    • masala_public

      Public
      The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular modelling, with a plugin-based infrastructure that makes it easy to extend other software.
      C++
      •
      GNU Affero General Public License v3.0
      •1•8•0•0•Updated Dec 10, 2025Dec 10, 2025

    • spack

      Public
      A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
      Python
      •
      Other
      •2.4k•2•0•14•Updated Dec 9, 2025Dec 9, 2025

    • cryojax-ensemble-optimization

      Public
      Python
      •
      MIT License
      •0•2•7•0•Updated Dec 8, 2025Dec 8, 2025

    • ParticleMeshEwald.jl

      Public
      Particle mesh Ewald via NonuniformFFTs.jl
      Julia
      •
      MIT License
      •0•1•0•0•Updated Dec 4, 2025Dec 4, 2025

    • nifty-ls

      Public
      A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
      time-serieslomb-scargle-periodogramspectral-analysis
      Python
      •
      Apache License 2.0
      •5•45•5•0•Updated Dec 4, 2025Dec 4, 2025

    • neuroRSE

      Public
      Website for CCN's neuroRSE group
      CSS
      •
      MIT License
      •0•1•0•0•Updated Dec 4, 2025Dec 4, 2025

    • lineage_viewer

      Public
      Graphical interface for editing a lineage and viewing related microscopy images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•7•0•Updated Dec 2, 2025Dec 2, 2025

    • disBatch

      Public
      Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
      distributed-computingbatch-processing
      Python
      •
      Apache License 2.0
      •9•46•7•0•Updated Dec 1, 2025Dec 1, 2025

    • aLENS

      Public
      a Living ENsemble Simulator -- a lens to help you watch biophysics
      parallel-computingcollision-detectionbiophysicscytoskeleton
      C++
      •
      Apache License 2.0
      •7•17•0•0•Updated Nov 27, 2025Nov 27, 2025

    • SimToolbox

      Public
      C++
      •
      Apache License 2.0
      •2•2•0•0•Updated Nov 27, 2025Nov 27, 2025

    • CryoLike

      Public
      Python
      •
      MIT License
      •7•13•8•8•Updated Nov 25, 2025Nov 25, 2025