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    86 repositories

    • funtracks

      Public
      A data model for cell tracking with actions, undo history, and more!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•33•3•Updated Dec 16, 2025Dec 16, 2025

    • motile_tracker

      Public
      An application for interactive for tracking with motile
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•97•5•Updated Dec 15, 2025Dec 15, 2025

    • finn

      Public
      finn is (not) napari
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•4•14•3•Updated Dec 15, 2025Dec 15, 2025

    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      machine-learningcomputer-visionpipelinemultidimensionalgunpowder
      Python
      •
      MIT License
      •58•86•12•1•Updated Dec 12, 2025Dec 12, 2025

    • morphix

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

    • lsd-lite

      Public
      Simple LSD and affinity graph computation
      Python
      •
      MIT License
      •1•2•0•0•Updated Dec 10, 2025Dec 10, 2025

    • tarflow

      Public
      Python
      •
      MIT License
      •28•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • c_elegans_tracking

      Public
      Python
      •1•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • motile_tracker_bundled_app

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Dec 1, 2025Dec 1, 2025

    • spatial_graph

      Public
      A spatial graph datastructure for python
      Python
      •
      MIT License
      •2•8•6•2•Updated Dec 1, 2025Dec 1, 2025

    • quac

      Public
      Quantitative Attributions with Counterfactuals
      Python
      •
      MIT License
      •0•2•6•2•Updated Dec 1, 2025Dec 1, 2025

    • ilpy

      Public
      Unified python wrappers for popular ILP solvers
      ilp-solver
      Python
      •
      MIT License
      •3•4•4•3•Updated Dec 1, 2025Dec 1, 2025

    • motile

      Public
      Multi-Object Tracker using Integer Linear Equations
      Python
      •
      MIT License
      •5•38•14•3•Updated Nov 24, 2025Nov 24, 2025

    • attrackt

      Public
      Unsupervised Cell Tracking and Interactive Fine-Tuning
      Python
      •0•1•18•0•Updated Nov 14, 2025Nov 14, 2025

    • attrackt_experiments

      Public
      Attrackt Experiments
      0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • lsd

      Public
      🌈
      Python
      •
      MIT License
      •40•66•3•2•Updated Oct 10, 2025Oct 10, 2025

    • funlib.geometry

      Public
      A package for Coordinates, Rois and common operations in Coordinate spaces
      Python
      •
      MIT License
      •4•1•0•0•Updated Sep 30, 2025Sep 30, 2025

    • funlib.persistence

      Public
      Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
      Python
      •
      MIT License
      •12•5•8•1•Updated Sep 28, 2025Sep 28, 2025

    • drosophila_neurotransmitters

      Public
      Neurotransmitter ground truth
      TeX
      •1•1•4•0•Updated Sep 26, 2025Sep 26, 2025

    • synister_malecns

      Public
      Neurotransmitter predictions on the Male CNS
      Jupyter Notebook
      •0•0•1•1•Updated Sep 2, 2025Sep 2, 2025

    • witty

      Public
      A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.
      Python
      •
      MIT License
      •1•3•0•0•Updated Aug 20, 2025Aug 20, 2025

    • zspace

      Public
      0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • sub_volume_renderer

      Public
      Multi-resolution chunked volume renderer
      Python
      •1•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • quac_experiments

      Public
      Experiments for the QuAC method
      Python
      •0•1•4•0•Updated Jul 8, 2025Jul 8, 2025

    • tree_view_sandbox

      Public
      A sandbox repo for developing a VisPy lineage tree viewer
      Python
      •1•0•0•1•Updated May 29, 2025May 29, 2025

    • quannectomics_paper

      Public
      Paper about using QuAC for connectomics discoveries
      TeX
      •2•0•0•0•Updated May 15, 2025May 15, 2025

    • structsvm

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Apr 16, 2025Apr 16, 2025

    • blinx

      Public
      Python
      •2•4•5•0•Updated Apr 16, 2025Apr 16, 2025

    • blinx_paper

      Public
      blinx paper
      TeX
      •1•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • funlib.show.neuroglancer

      Public
      Scripts and helpers for the neuroglancer WebGL viewer.
      Python
      •13•6•0•0•Updated Apr 5, 2025Apr 5, 2025