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    • funtracks

      Public
      A data model for cell tracking with actions, undo history, and more!
      Python
      13333Updated Dec 16, 2025Dec 16, 2025
    • An application for interactive for tracking with motile
      Python
      59975Updated Dec 15, 2025Dec 15, 2025
    • finn

      Public
      finn is (not) napari
      Python
      24143Updated Dec 15, 2025Dec 15, 2025
    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      5886121Updated Dec 12, 2025Dec 12, 2025
    • morphix

      Public
      Python
      0000Updated Dec 10, 2025Dec 10, 2025
    • lsd-lite

      Public
      Simple LSD and affinity graph computation
      Python
      1200Updated Dec 10, 2025Dec 10, 2025
    • tarflow

      Public
      Python
      28000Updated Dec 9, 2025Dec 9, 2025
    • Python
      1000Updated Dec 3, 2025Dec 3, 2025
    • Python
      0001Updated Dec 1, 2025Dec 1, 2025
    • A spatial graph datastructure for python
      Python
      2862Updated Dec 1, 2025Dec 1, 2025
    • quac

      Public
      Quantitative Attributions with Counterfactuals
      Python
      0262Updated Dec 1, 2025Dec 1, 2025
    • ilpy

      Public
      Unified python wrappers for popular ILP solvers
      Python
      3443Updated Dec 1, 2025Dec 1, 2025
    • motile

      Public
      Multi-Object Tracker using Integer Linear Equations
      Python
      538143Updated Nov 24, 2025Nov 24, 2025
    • attrackt

      Public
      Unsupervised Cell Tracking and Interactive Fine-Tuning
      Python
      01180Updated Nov 14, 2025Nov 14, 2025
    • Attrackt Experiments
      0000Updated Nov 5, 2025Nov 5, 2025
    • lsd

      Public
      🌈
      Python
      406632Updated Oct 10, 2025Oct 10, 2025
    • A package for Coordinates, Rois and common operations in Coordinate spaces
      Python
      4100Updated Sep 30, 2025Sep 30, 2025
    • Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
      Python
      12581Updated Sep 28, 2025Sep 28, 2025
    • Neurotransmitter ground truth
      TeX
      1140Updated Sep 26, 2025Sep 26, 2025
    • Neurotransmitter predictions on the Male CNS
      Jupyter Notebook
      0011Updated Sep 2, 2025Sep 2, 2025
    • witty

      Public
      A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.
      Python
      1300Updated Aug 20, 2025Aug 20, 2025
    • zspace

      Public
      0000Updated Aug 4, 2025Aug 4, 2025
    • Multi-resolution chunked volume renderer
      Python
      1000Updated Jul 31, 2025Jul 31, 2025
    • Experiments for the QuAC method
      Python
      0140Updated Jul 8, 2025Jul 8, 2025
    • A sandbox repo for developing a VisPy lineage tree viewer
      Python
      1001Updated May 29, 2025May 29, 2025
    • Paper about using QuAC for connectomics discoveries
      TeX
      2000Updated May 15, 2025May 15, 2025
    • structsvm

      Public
      Python
      1100Updated Apr 16, 2025Apr 16, 2025
    • blinx

      Public
      Python
      2450Updated Apr 16, 2025Apr 16, 2025
    • blinx paper
      TeX
      1000Updated Apr 16, 2025Apr 16, 2025
    • Scripts and helpers for the neuroglancer WebGL viewer.
      Python
      13600Updated Apr 5, 2025Apr 5, 2025