Repositories list

• Intro-to-Python

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  hbctraining/Intro-to-Python’s past year of commit activity
  CSS

  •0•0•7•0•Updated Apr 3, 2026Apr 3, 2026

• Intro-to-spatial-scRNA-seq

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  hbctraining/Intro-to-spatial-scRNA-seq’s past year of commit activity
  This is a repository for the Introduction to Spatial scRNA-seq course materials

  R

  •1•1•0•0•Updated Apr 1, 2026Apr 1, 2026

• main

  Public template

  hbctraining/main’s past year of commit activity
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  Other

  •17•57•0•1•Updated Mar 25, 2026Mar 25, 2026

• spatial_nanocourse

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  hbctraining/spatial_nanocourse’s past year of commit activity
  Module for Visium HD analysis for Nanocourse organized by SCC

  HTML

  •2•2•7•0•Updated Mar 20, 2026Mar 20, 2026

• FoG_scRNA-seq_viz

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  https://hbctraining.github.io/FoG_scRNA-seq_viz/

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  Creative Commons Zero v1.0 Universal

  •1•1•0•0•Updated Mar 20, 2026Mar 20, 2026

• Pseudobulk-for-scRNAseq-Quarto

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  hbctraining/Pseudobulk-for-scRNAseq-Quarto’s past year of commit activity
  CSS

  •0•4•0•0•Updated Mar 20, 2026Mar 20, 2026

• Intro-to-R-Quarto

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  R

  •2•1•2•0•Updated Mar 20, 2026Mar 20, 2026

• Intro-to-RShiny

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  CSS

  •0•1•2•0•Updated Mar 20, 2026Mar 20, 2026

• Intro-to-rnaseq-hpc-gt

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  hbctraining/Intro-to-rnaseq-hpc-gt’s past year of commit activity
  Introduction to RNA-seq using HPC

  Shell

  •19•11•1•0•Updated Mar 20, 2026Mar 20, 2026

• In-depth-NGS-Data-Analysis-Course-1

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  HTML

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  •267•0•0•0•Updated Mar 20, 2026Mar 20, 2026

• Intro-to-R-online-Catalyst

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  Contains materials for an online version of the Introduction to R

  SCSS

  •2•4•0•0•Updated Mar 20, 2026Mar 20, 2026

• versioning_data_scripts

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  GitKraken lesson (forked from HBS-RCS)

  R

  •22•10•1•0•Updated Mar 20, 2026Mar 20, 2026

• Rmarkdown_analysis_reports

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  rrmarkdownreports

  rrmarkdownreports

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  •3•4•2•0•Updated Mar 20, 2026Mar 20, 2026

• GCC-BOSC-2018

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  Lessons for "Setting up for Success when planning an RNA-seq experiment" session at GCC-BOSC 2018

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  •12•5•1•0•Updated Mar 20, 2026Mar 20, 2026

• rnaseq_overview

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  Short course describing the considerations for a successful RNA-seq experiment

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  Other

  •13•19•9•0•Updated Mar 20, 2026Mar 20, 2026

• RNA-seq-CB321qc_2022

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  Teaching RNA-seq experimental design and analysis + data storage and sharing for genomics data

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  •5•3•0•0•Updated Mar 20, 2026Mar 20, 2026

• rnaseq-cb321

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  June 5, 2019

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  •3•9•0•0•Updated Mar 20, 2026Mar 20, 2026

• bioinformatics_online

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  Resource list and preparation instructions for online learning and teaching for Bioinformatics

  bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online

  bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online

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  •10•19•0•0•Updated Mar 20, 2026Mar 20, 2026

• BBS230B_2023

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  RNA-seq experimental design and analysis

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  •5•4•0•0•Updated Mar 20, 2026Mar 20, 2026

• EpiR

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  Introduction to R for Epi summer program

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  •4•3•0•0•Updated Mar 20, 2026Mar 20, 2026

• Accessing_public_genomic_data

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  Tutorials on accessing public reference and genomic data

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  •16•32•2•0•Updated Mar 20, 2026Mar 20, 2026

• Pseudobulk-for-scRNAseq

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  Approaches for looking at differential expression and differential abundance in scRNA-seq

  R

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  Creative Commons Zero v1.0 Universal

  •3•4•8•0•Updated Mar 20, 2026Mar 20, 2026

• collaborations

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  Collaborations across campus

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  •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

• Intro-to-DGE

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  •87•214•3•0•Updated Mar 20, 2026Mar 20, 2026

• Intro-to-peak-analysis

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  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq

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  Creative Commons Zero v1.0 Universal

  •6•39•7•0•Updated Mar 20, 2026Mar 20, 2026

• BMI714_Intro_to_HPC

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  Shell

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  •14•7•0•0•Updated Mar 20, 2026Mar 20, 2026

• Tools-for-reproducible-research

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  R

  •10•13•15•0•Updated Mar 20, 2026Mar 20, 2026

• external

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  Creative Commons Zero v1.0 Universal

  •0•0•1•0•Updated Mar 20, 2026Mar 20, 2026

• publication_perfect

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  Six hour hands-on to creating publication-quality plots in R

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  •19•43•5•0•Updated Mar 20, 2026Mar 20, 2026

• Training-modules

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  Materials for short, half-day workshops

  Jupyter Notebook

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  •154•347•18•3•Updated Mar 18, 2026Mar 18, 2026