Repositories list

• PIC-SURE-Frontend

  Public
  A frontend for the PIC-SURE API

  TypeScript

  •

  Apache License 2.0

  •1•1•0•8•Updated Mar 17, 2026Mar 17, 2026

• pic-sure-hpds

  Public

  hms-dbmi/pic-sure-hpds’s past year of commit activity
  Java

  •

  Apache License 2.0

  •7•3•0•4•Updated Mar 17, 2026Mar 17, 2026

• udi-chat

  Public
  For experimenting with chat based interface for the Universal Discovery Interface.

  hidivelabbdf-toolbox

  hidivelabbdf-toolbox

  Vue

  •

  MIT License

  •1•1•5•16•Updated Mar 16, 2026Mar 16, 2026

• avillachlab-jenkins

  Public
  HCL

  •

  Apache License 2.0

  •6•5•0•2•Updated Mar 16, 2026Mar 16, 2026

• pic-sure-auth-microapp

  Public
  Java

  •

  Apache License 2.0

  •6•4•0•8•Updated Mar 16, 2026Mar 16, 2026

• pic-sure-bdc-release-control

  Public
  Apache License 2.0

  •8•1•0•0•Updated Mar 16, 2026Mar 16, 2026

• pic-sure

  Public
  PIC-SURE API

  pic-surepicsure

  pic-surepicsure

  Java

  •

  Apache License 2.0

  •3•6•0•6•Updated Mar 16, 2026Mar 16, 2026

• pic-sure-bdc-infrastructure

  Public
  HCL

  •

  Apache License 2.0

  •1•5•0•6•Updated Mar 16, 2026Mar 16, 2026

• hypatio-app

  Public
  Python

  •1•4•0•7•Updated Mar 16, 2026Mar 16, 2026

• dbmi-fileservice

  Public
  Python

  •0•2•0•2•Updated Mar 16, 2026Mar 16, 2026

• dbmisvc-starter

  Public
  Python

  •0•1•0•2•Updated Mar 16, 2026Mar 16, 2026

• avillachlab-jenkins-bdc-etl

  Public
  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

• udi-grammar

  Public
  The Universal Discovery Interface Grammar.

  hidivelabbdf-toolbox

  hidivelabbdf-toolbox

  TypeScript

  •

  MIT License

  •4•4•3•17•Updated Mar 15, 2026Mar 15, 2026

• i2b2v2-webclient

  Public
  JavaScript

  •5•2•1•3•Updated Mar 14, 2026Mar 14, 2026

• UNVEIL

  Public
  UNVEIL

  Python

  •

  GNU Affero General Public License v3.0

  •0•1•0•2•Updated Mar 13, 2026Mar 13, 2026

• picsure-dictionary

  Public
  Java

  •

  Apache License 2.0

  •2•0•0•3•Updated Mar 13, 2026Mar 13, 2026

• UDIAgent

  Public
  UDIAgent: Inference for generating visualizations from natural language prompts

  hidivelabbdf-toolbox

  hidivelabbdf-toolbox

  Python

  •

  MIT License

  •95•0•7•1•Updated Mar 12, 2026Mar 12, 2026

• DQVis-Generation

  Public
  code for generating training data used for fine-tuning the LLM

  hidivelab

  hidivelab

  Jupyter Notebook

  •

  MIT License

  •4•4•0•11•Updated Mar 12, 2026Mar 12, 2026

• picsure-dictionary-etl

  Public
  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 12, 2026Mar 12, 2026

• vizarr

  Public
  A minimal Zarr image viewer based on Viv.

  jupyter-notebookszarrviv+ 1

  jupyter-notebookszarrvivhidivelab

  TypeScript

  •

  MIT License

  •38•186•26•15•Updated Mar 12, 2026Mar 12, 2026

• PIC-SURE-Logging-Client

  Public
  Lightweight Java client library for sending audit events to the PIC-SURE Logging service.

  Java

  •0•0•0•1•Updated Mar 11, 2026Mar 11, 2026

• pic-sure-baseline-release-control

  Public
  5•0•0•0•Updated Mar 11, 2026Mar 11, 2026

• chromoscope

  Public
  Interactive multiscale visualization for structural variation in human genomes

  hidivelab

  hidivelab

  TypeScript

  •

  MIT License

  •7•72•37•3•Updated Mar 10, 2026Mar 10, 2026

• biodata_catalyst_stigmatizing_variables

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 10, 2026Mar 10, 2026

• PIC-SURE-Logging

  Public
  Prints audit logs to a file

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

• tissue-map-tools

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•14•7•0•Updated Mar 9, 2026Mar 9, 2026

• viv

  Public
  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  imagingome-tiffopenmicroscopy+ 4

  imagingome-tiffopenmicroscopyzarrvivhubmaphidivelab

  JavaScript

  •

  MIT License

  •59•338•56•22•Updated Mar 9, 2026Mar 9, 2026

• gehlenborglab-website

  Public
  Code for HIDIVE Lab website.

  websitehidivelab

  websitehidivelab

  TypeScript

  •

  MIT License

  •41•10•12•6•Updated Mar 9, 2026Mar 9, 2026

• pic-sure-frontend-harness

  Public
  Shell

  •0•0•0•0•Updated Mar 7, 2026Mar 7, 2026

• ETLToolSuite-EntityGenerator

  Public
  This tool will generate Entity Files that can be used to load into Datasources.

  Java

  •

  Apache License 2.0

  •0•0•0•3•Updated Mar 6, 2026Mar 6, 2026