Harvard Medical School - Department of Biomedical Informatics

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385 repositories

i2b2v2-webclient
Public
JavaScript
•5•2•1•3•Updated Jan 8, 2026Jan 8, 2026
pic-sure-hpds
Public
Java
•
Apache License 2.0
•7•3•0•2•Updated Jan 8, 2026Jan 8, 2026
PIC-SURE-Migrations
Public
Database migrations for the PIC-SURE All-in-One.
Apache License 2.0
•0•0•0•0•Updated Jan 8, 2026Jan 8, 2026
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•1•Updated Jan 8, 2026Jan 8, 2026
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
•
Apache License 2.0
•1•1•0•11•Updated Jan 8, 2026Jan 8, 2026
pic-sure-auth-microapp
Public
Java
•
Apache License 2.0
•6•4•0•2•Updated Jan 8, 2026Jan 8, 2026
scellop
Public
Cell Population Viewer
cell-populations hidivelab
TypeScript
•
MIT License
•1•2•5•7•Updated Jan 8, 2026Jan 8, 2026
pic-sure-gic-institution-release-control
Public
Apache License 2.0
•0•0•0•0•Updated Jan 8, 2026Jan 8, 2026
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy zarr viv hubmap hidivelab
JavaScript
•
MIT License
•57•330•57•19•Updated Jan 8, 2026Jan 8, 2026
pic-sure-bdc-infrastructure
Public
HCL
•
Apache License 2.0
•1•5•0•2•Updated Jan 8, 2026Jan 8, 2026
GQVis-Generation
Public
code for generating genomics training data used for fine-tuning the LLM
Python
•
MIT License
•4•0•0•7•Updated Jan 8, 2026Jan 8, 2026
aws-finops-dashboard
Public
A terminal-based AWS cost and resource dashboard built with Python and the Rich library. It provides an overview of AWS spend by account, service-level breakdowns, budget tracking, and EC2 instance summaries.
Python
•
MIT License
•276•0•0•1•Updated Jan 8, 2026Jan 8, 2026
DQVis-Generation
Public
code for generating training data used for fine-tuning the LLM
hidivelab
Jupyter Notebook
•
MIT License
•4•4•1•10•Updated Jan 8, 2026Jan 8, 2026
CHIEF
Public
Clinical Histopathology Imaging Evaluation Foundation Model
Python
•
GNU Affero General Public License v3.0
•112•683•38•10•Updated Jan 8, 2026Jan 8, 2026
avillachlab-jenkins-bdc-etl
Public
Shell
•
Apache License 2.0
•0•0•0•0•Updated Jan 8, 2026Jan 8, 2026
ETLToolSuite-EntityGenerator
Public
This tool will generate Entity Files that can be used to load into Datasources.
Java
•
Apache License 2.0
•0•0•0•1•Updated Jan 7, 2026Jan 7, 2026
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Python
•
Apache License 2.0
•0•0•0•2•Updated Jan 7, 2026Jan 7, 2026
UDIAgent
Public
UDIAgent: Inference for generating visualizations from natural language prompts
hidivelab bdf-toolbox
Python
•
MIT License
•90•0•7•0•Updated Jan 7, 2026Jan 7, 2026
udi-grammar
Public
The Universal Discovery Interface Grammar.
hidivelab bdf-toolbox
TypeScript
•
MIT License
•3•4•3•14•Updated Jan 7, 2026Jan 7, 2026
udi-chat
Public
For experimenting with chat based interface for the Universal Discovery Interface.
hidivelab bdf-toolbox
Vue
•
MIT License
•0•0•5•12•Updated Jan 7, 2026Jan 7, 2026
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
•
Apache License 2.0
•0•1•0•0•Updated Jan 7, 2026Jan 7, 2026
uchimata
Public
Library for visualizing three-dimensional genome models and associated genomics data
hidivelab
TypeScript
•
MIT License
•0•3•4•3•Updated Jan 6, 2026Jan 6, 2026
pic-sure-baseline-release-control
Public
5•0•0•0•Updated Jan 6, 2026Jan 6, 2026
GQVis-review
Public
For reviewing the generated genomics datasets.
Vue
•
MIT License
•3•0•0•8•Updated Jan 5, 2026Jan 5, 2026
DQVis-review
Public
For reviewing the generated datasets.
hidivelab
Vue
•
MIT License
•3•1•0•7•Updated Jan 5, 2026Jan 5, 2026
hypatio-app
Public
Python
•1•4•0•8•Updated Jan 5, 2026Jan 5, 2026
dbmi-fileservice
Public
Python
•0•2•0•4•Updated Jan 5, 2026Jan 5, 2026
dbmisvc-starter
Public
Python
•0•1•0•3•Updated Jan 5, 2026Jan 5, 2026
gehlenborglab-website
Public
Code for HIDIVE Lab website.
website hidivelab
TypeScript
•
MIT License
•41•10•11•3•Updated Jan 1, 2026Jan 1, 2026
vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks zarr viv hidivelab
TypeScript
•
MIT License
•37•176•26•14•Updated Jan 1, 2026Jan 1, 2026