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233 repositories

trimal
Public
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
trimming multiple-sequence-alignment bioinformatics-tool
trimming multiple-sequence-alignment bioinformatics-tool
C++
•
GNU General Public License v3.0
•48•268•34•3•Updated Aug 7, 2026Aug 7, 2026
openVRE-core-dev
Public
Open Virtual Research Environment development version
vre
vre
PHP
•3•0•3•0•Updated Aug 6, 2026Aug 6, 2026
analysis-types-for-TREs
Public
Site describing federated analysis methods by TRE requirements
JavaScript
•2•0•0•0•Updated Aug 6, 2026Aug 6, 2026
benchmarking-data-model
Public
OpenEBench Benchmarking Data Model repository
benchmarking backend data-model
benchmarking backend data-model scientific vre openebench elixir-europe elixir-spain
HTML
•
Creative Commons Attribution Share Alike 4.0 International
•7•2•7•1•Updated Aug 5, 2026Aug 5, 2026
fingerhost
Public
This library helps computing several cheap fingerprints of the execution environment
Python
•
GNU Lesser General Public License v2.1
•0•0•0•1•Updated Aug 4, 2026Aug 4, 2026
openvre-k8s-deploy
Public
To deploying openvre on kubernetes k8 cluster using helm charts
Go Template
•0•0•0•0•Updated Aug 4, 2026Aug 4, 2026
WfExS-backend
Public
Workflow Execution Service Backend
workflows research-object esg
workflows research-object esg eosc-life wfexs ejp-rd eosc-entrust
Python
•
Apache License 2.0
•6•21•27•0•Updated Aug 3, 2026Aug 3, 2026
openEBench-nuxt
Public
Vue Client for the OpenEBench Micro Frontends
openebench
openebench
JavaScript
•
Apache License 2.0
•3•3•5•13•Updated Aug 3, 2026Aug 3, 2026
python-groovy-parser
Public
Repo with a proof of concept of Groovy parser
Python
•
Apache License 2.0
•1•2•1•0•Updated Aug 3, 2026Aug 3, 2026
wiktionary-term-fetcher
Public
Wiktionary term fetcher, written in python
python wiktionary wfexs
python wiktionary wfexs
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Aug 3, 2026Aug 3, 2026
OEB_level2_data_migration
Public
openebench
openebench
Python
•
GNU General Public License v3.0
•2•0•2•0•Updated Jul 31, 2026Jul 31, 2026
InSoLiTo
Public
Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking
openebench
openebench
Python
•
MIT License
•2•3•7•0•Updated Jul 30, 2026Jul 30, 2026
openEBench-nuxt-v3
Public
OpenEBench Micro Frontends. Nuxt 3 version
vue nuxtjs 2024
vue nuxtjs 2024
Vue
•
Apache License 2.0
•0•1•22•0•Updated Jul 30, 2026Jul 30, 2026
research-software-etl
Public
Automated pipeline for extracting, normalizing, and integrating software metadata from diverse sources
Python
•
GNU Affero General Public License v3.0
•0•0•1•0•Updated Jul 28, 2026Jul 28, 2026
tessap
Public
TESSAP: A docker shim which submits commands to a GA4GH TES service
esg
esg
Python
•
Apache License 2.0
•0•0•0•3•Updated Jul 27, 2026Jul 27, 2026
treecript
Public
A set of python scripts to monitor, collect, and visualize metrics of a given Linux process or a give command line
steers elixir-steers
steers elixir-steers
Python
•
GNU General Public License v3.0
•14•6•11•1•Updated Jul 27, 2026Jul 27, 2026
crypt4ghfs
Public
A fuse layer showing Crypt4GH encrypted files as if they were decrypted
Python
•3•0•0•0•Updated Jul 25, 2026Jul 25, 2026
softpair-renderer
Public
A utility for generating side-by-side HTML panels from software metadata documents. The HTML is designed to be embedded in Label Studio so annotators can quickl…
Python
•
MIT License
•0•0•0•0•Updated Jul 21, 2026Jul 21, 2026
beacon-template-ui
Public
EGA - CRG - BSC beacon ui
JavaScript
•
Apache License 2.0
•8•1•0•0•Updated Jul 8, 2026Jul 8, 2026
oeb-visualizations
Public
Library of data visualizations for OpenEBench
vue plotlyjs openebench
vue plotlyjs openebench
HTML
•
MIT License
•0•0•2•21•Updated Jul 8, 2026Jul 8, 2026
observatory-api
Public
Software Observatory API
fairsoft fastapi fair-software
fairsoft fastapi fair-software software-metadata
Python
•
MIT License
•0•1•1•0•Updated Jul 8, 2026Jul 8, 2026
ro-terms-treecript
Public
Repository for creating new terms for Research Objects
Python
•15•0•0•0•Updated Jul 8, 2026Jul 8, 2026
SEED-ALS
Public
Web portal presenting results and visualizations from the multi-omics analyses performed within the SEED-ALS project.
TypeScript
•
GNU Affero General Public License v3.0
•3•2•6•0•Updated Jun 25, 2026Jun 25, 2026
bench_event_api
Public
bench_event_api
flask openebench
flask openebench
Python
•
GNU Lesser General Public License v2.1
•3•1•0•1•Updated Jun 22, 2026Jun 22, 2026
oeb-docker-compose
Public
Docker Compose Files for the OpenEBench Landscape
frontend openebench
frontend openebench
Apache License 2.0
•1•2•0•0•Updated Jun 18, 2026Jun 18, 2026
licenses-mapping
Public
A tool to map strings to SPDX licenses names or IDs.
licensing spdx fastapi
licensing spdx fastapi
Python
•
Apache License 2.0
•0•0•3•0•Updated Jun 1, 2026Jun 1, 2026
fairsoft-core
Public
Evaluation logic for FAIRsoft indicators and scores
python3 fairness
python3 fairness
Python
•
MIT License
•0•0•0•0•Updated May 12, 2026May 12, 2026
disease_perception
Public
Disease PERCEPTION: Personalized Comorbidity Profile Generation
comorbidities comorbidity-network
comorbidities comorbidity-network
JavaScript
•
GNU Affero General Public License v3.0
•1•3•7•10•Updated May 7, 2026May 7, 2026
github-metadata-api
Public
API to extract metadata from a GitHub repository and update files.
github nodejs metadata-extraction
github nodejs metadata-extraction software-metadata
JavaScript
•
MIT License
•0•1•2•1•Updated Apr 29, 2026Apr 29, 2026
opeb-tools-importer
Public
Retrieves software records from OEB to the Software Observatory
Python
•
MIT License
•0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

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Spanish National Bioinformatics Institute

All

All

233 repositories

trimal

openVRE-core-dev

analysis-types-for-TREs

benchmarking-data-model

fingerhost

openvre-k8s-deploy

WfExS-backend

openEBench-nuxt

python-groovy-parser

wiktionary-term-fetcher

OEB_level2_data_migration

InSoLiTo

openEBench-nuxt-v3

research-software-etl

tessap

treecript

crypt4ghfs

softpair-renderer

beacon-template-ui

oeb-visualizations

observatory-api

ro-terms-treecript

SEED-ALS

bench_event_api

oeb-docker-compose

licenses-mapping

fairsoft-core

disease_perception

github-metadata-api

opeb-tools-importer

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Repositories list

233 repositories