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    49 repositories

    • teaching_MS-MO-ABS

      Public
      MS-MO-ABS teaching material
      Jupyter Notebook
      •0•0•1•1•Updated Sep 3, 2026Sep 3, 2026

    • qiita

      Public
      Qiita - A multi-omics databasing effort
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •82•0•0•2•Updated Sep 3, 2026Sep 3, 2026

    • marbel

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • rust-debruijn

      Public
      De Bruijn graphs in Rust
      Rust
      •
      MIT License
      •19•0•3•1•Updated Jul 24, 2026Jul 24, 2026

    • scikit-bio

      Public
      scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •340•0•0•1•Updated Jul 6, 2026Jul 6, 2026

    • q2-diversity

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •49•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • orb

      Public
      Reference based, assembly evaluation
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • ancombc2-heatmaps

      Public
      Jupyter Notebook
      •0•0•1•1•Updated Jun 9, 2026Jun 9, 2026

    • caviar

      Public
      assembler exection pipeline
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 13, 2026May 13, 2026

    • metaT_supplementary_information

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 13, 2026May 13, 2026

    • InSilicoSeq

      Public
      :rocket: A sequencing simulator
      Python
      •
      MIT License
      •36•0•0•0•Updated May 13, 2026May 13, 2026

    • qiita-keycloak

      Public
      containerized keycloak configuration
      Shell
      •0•0•12•6•Updated May 12, 2026May 12, 2026

    • qiita_client

      Public
      A python library that simplifies the communication between the plugins and Qiita's REST api
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•0•0•2•Updated May 8, 2026May 8, 2026

    • gapc

      Public
      Bellman's GAP compiler
      C++
      •
      GNU General Public License v3.0
      •6•6•19•9•Updated May 7, 2026May 7, 2026

    • gapc-test-suite

      Public
      Additional test data for "Bellman's GAP" (gapc)
      GAP
      •0•0•1•0•Updated May 7, 2026May 7, 2026

    • qtp-visualization

      Public
      Qiita type plugin for visualization artifacts
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•2•Updated Apr 26, 2026Apr 26, 2026

    • qtp-biom

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•2•Updated Apr 24, 2026Apr 24, 2026

    • qp-target-gene

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•2•Updated Apr 24, 2026Apr 24, 2026

    • qp-multiqc

      Public
      Python
      •0•0•4•0•Updated Apr 17, 2026Apr 17, 2026

    • qtp-job-output-folder

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•3•Updated Apr 11, 2026Apr 11, 2026

    • qtp-sequencing

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•2•Updated Apr 9, 2026Apr 9, 2026

    • qp-qiime2

      Public
      Qiime 2 plugin for Qiita
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•2•Updated Apr 9, 2026Apr 9, 2026

    • qtp-diversity

      Public
      Qiita Type Plugin for diversity types
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•1•Updated Apr 1, 2026Apr 1, 2026

    • qp-deblur

      Public
      Python
      •8•0•0•2•Updated Mar 31, 2026Mar 31, 2026

    • sixteenspreprocess

      Public
      Preprocess 16S data with nextflow
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • marbel-to-vizitig

      Public
      Python
      •1•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • qp-platemapper

      Public
      An Emperor based plate mapping visualization
      0•0•0•2•Updated Sep 4, 2025Sep 4, 2025

    • qiita-files

      Public
      File formats defined for Qiita and Qiita plugins internal use
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Aug 31, 2025Aug 31, 2025

    • sepp

      Public
      Ensemble of HMM methods (SEPP, TIPP, UPP)
      Python
      •
      GNU General Public License v3.0
      •39•0•0•1•Updated Aug 8, 2025Aug 8, 2025

    • bellmanscafe

      Public
      Interactive GAPc Website
      Python
      •2•0•7•1•Updated Aug 6, 2025Aug 6, 2025
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