Skip to content

@kbaseapps kbaseapps

Change the repository type filter

All

    Repositories list

    232 repositories

    • kb_gtdbtk

      Public
      GTDB-Tk App
      Python
      •
      MIT License
      •10•4•6•8•Updated Nov 13, 2025Nov 13, 2025

    • KBAnnotationApps

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • sketch_service

      Public
      Service that returns similar genomes from a given assembly/genome ID
      Python
      •
      MIT License
      •3•0•0•18•Updated Nov 1, 2025Nov 1, 2025

    • kb_bedtools

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Oct 21, 2025Oct 21, 2025

    • kb_phylogenomics

      Public
      Python
      •
      MIT License
      •6•2•2•0•Updated Oct 21, 2025Oct 21, 2025

    • GenericsUtil

      Public
      Utilities to import and map KBase Generic objects.
      Java
      •
      MIT License
      •1•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • kb_quast

      Public
      KBase wrapper for the QUAST assembly quality assessment tool.
      Python
      •
      MIT License
      •9•0•0•2•Updated Oct 8, 2025Oct 8, 2025

    • GenomeFileUtil

      Public
      Python
      •
      MIT License
      •14•0•3•2•Updated Sep 22, 2025Sep 22, 2025

    • kb_kaiju

      Public
      Python
      •
      MIT License
      •9•0•0•3•Updated Sep 11, 2025Sep 11, 2025

    • kb_Msuite

      Public
      Python
      •
      MIT License
      •11•0•1•1•Updated Sep 9, 2025Sep 9, 2025

    • kb_MaSuRCA

      Public
      This KBase app wraps the genome assembly software MaSuRCA(Maryland Super-Read Celera Assembler)
      Python
      •
      MIT License
      •3•1•0•0•Updated Sep 2, 2025Sep 2, 2025

    • kb_cutadapt

      Public
      KBase wrapper for the cutadapt tool
      Python
      •
      MIT License
      •5•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • kb_stringtie

      Public
      Module for running the StringTie application (http://ccb.jhu.edu/software/stringtie/index.shtml)
      Python
      •
      MIT License
      •9•2•1•1•Updated Sep 2, 2025Sep 2, 2025

    • kb_SPAdes

      Public
      SPAdes wrapper
      Python
      •
      MIT License
      •16•0•1•3•Updated Jul 28, 2025Jul 28, 2025

    • BBTools

      Public
      Python
      •
      MIT License
      •4•5•1•1•Updated Jul 16, 2025Jul 16, 2025

    • kb_lighter

      Public
      First KBase App from ground up
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • DataFileUtil

      Public
      Python
      •
      MIT License
      •11•0•10•4•Updated May 26, 2025May 26, 2025

    • kb_unicycler

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • kb_ObjectInfo

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Apr 10, 2025Apr 10, 2025

    • kb_djornl

      Public
      A KBase module wrapper and visualization for RWR tools which use the random walk with restart method on multiplex coexpression networks representing genes (nodes) and distinct lines of evidence (edges) facilitating the rapid determination of the functional context of a set of genes of interest.
      Python
      •
      MIT License
      •4•4•0•0•Updated Apr 4, 2025Apr 4, 2025

    • KBaseReport

      Public
      Save plain text, HTML documents, and files as output from a KBase app
      Python
      •
      MIT License
      •9•0•1•0•Updated Mar 6, 2025Mar 6, 2025

    • kb_trimmomatic

      Public
      Python
      •
      MIT License
      •11•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • kb_fasttree

      Public
      Python
      •
      MIT License
      •2•0•0•8•Updated Nov 1, 2024Nov 1, 2024

    • StaticNarrative

      Public
      A dynamic service for creating and managing Static Narratives
      Python
      •
      MIT License
      •3•1•0•3•Updated Sep 1, 2024Sep 1, 2024

    • NarrativeService

      Public
      Python
      •
      MIT License
      •10•0•0•0•Updated Aug 23, 2024Aug 23, 2024

    • kb_sdk_actions

      Public
      GitHub Actions workflow for testing KBase SDK-based apps.
      Shell
      •0•0•0•2•Updated Aug 13, 2024Aug 13, 2024

    • cb_annotation_ontology_api

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • kb_ObjectUtilities

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 30, 2024Jul 30, 2024

    • WsLargeDataIO

      Public
      Java
      •
      MIT License
      •3•0•1•0•Updated Jul 29, 2024Jul 29, 2024

    • kb_staging_exporter

      Public
      Python
      •
      MIT License
      •3•0•1•0•Updated Jul 15, 2024Jul 15, 2024