Repositories list

• MACS

  Public
  MACS -- Model-based Analysis of ChIP-Seq

  pythondnase-seqchip-seq+ 4

  pythondnase-seqchip-seqpeak-calleratac-seqpoisson-equationmacs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •273273 forks•775775 stars•262262 issues•00 pull requests•Updated May 6, 2026May 6, 2026

• genomics-analysis-pipelines

  Public
  Pipeline codes for analyzing various genomics datasets based on MACS3

  atac-seq-pipelinechip-seq-pipeline

  atac-seq-pipelinechip-seq-pipeline

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •99 forks•88 stars•00 issues•00 pull requests•Updated Aug 5, 2025Aug 5, 2025

• MACSr

  Public
  MACS3 R/BioC wrapper

  rbioconductorchip-seq+ 1

  rbioconductorchip-seqmacs

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •55 forks•88 stars•00 issues•00 pull requests•Updated Sep 20, 2024Sep 20, 2024

• HMMRATAC

  Public
  HMMRATAC peak caller for ATAC-seq data

  Java

  •

  GNU General Public License v3.0

  •2121 forks•00 stars•00 issues•00 pull requests•Updated Mar 7, 2022Mar 7, 2022

• MAESTRO

  Public
  Single-cell Transcriptome and Regulome Analysis Pipeline

  C

  •

  GNU General Public License v3.0

  •7979 forks•44 stars•00 issues•00 pull requests•Updated Mar 2, 2022Mar 2, 2022

• chromap

  Public
  Fast alignment and preprocessing of chromatin profiles

  C++

  •

  MIT License

  •2929 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2022Feb 23, 2022

• MACSdata

  Public
  R

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Dec 8, 2020Dec 8, 2020

• MACS3-website

  Public
  Website of MACS3

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 3, 2020Jun 3, 2020

• MACS3-docs

  Public
  Documentations of MACS3

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 3, 2020Jun 3, 2020