Repositories list

• mastodon-deep-lineage

  Public
  A collection of plugins to analyse lineages of tracked objects in Mastodon

  Java

  •

  BSD 2-Clause "Simplified" License

  •11 fork•88 stars•88 issues•44 pull requests•Updated May 12, 2026May 12, 2026

• mastodon-blender-view

  Public
  Mastodon 3D View that uses Blender

  Java

  •

  BSD 2-Clause "Simplified" License

  •22 forks•55 stars•1212 issues•33 pull requests•Updated Apr 17, 2026Apr 17, 2026

• mastodon-documentation

  Public
  The documentation of the Mastodon bioimage analysis tool.

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• mastodon

  Public
  Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

  javaimglib2interactive-analysis+ 7

  javaimglib2interactive-analysisinteractive-visualizationstracking-algorithmbioimage-analysismicroscopy-imageslarge-imagestrackmatecell-lineage

  Java

  •

  BSD 2-Clause "Simplified" License

  •2222 forks•8383 stars•2121 issues•33 pull requests•Updated Feb 3, 2026Feb 3, 2026

• mastodon-collection

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •44 forks•33 stars•22 issues•00 pull requests•Updated Nov 1, 2025Nov 1, 2025

• mastodon-graph

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •22 forks•44 stars•00 issues•00 pull requests•Updated Oct 5, 2025Oct 5, 2025

• mastodon-ellipsoid-fitting

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •33 forks•22 stars•33 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• mastodon-tracking

  Public
  Basic tracking algorithms based on Mastodon data structures.

  Java

  •

  BSD 2-Clause "Simplified" License

  •33 forks•44 stars•44 issues•11 pull request•Updated Sep 16, 2025Sep 16, 2025

• mastodon-tomancak

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •55 forks•11 star•99 issues•44 pull requests•Updated Sep 16, 2025Sep 16, 2025

• mastodon-ctc

  Public
  Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format

  Java

  •

  BSD 2-Clause "Simplified" License

  •33 forks•11 star•77 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• mastodon-benchmark

  Public
  Language and framework for reproducible benchmarking of Mastodon main displays.

  Java

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 14, 2025Aug 14, 2025

• mastodon-simulator

  Public
  Cell population growth simulator implemented in Mastodon.

  Java

  •

  BSD 2-Clause "Simplified" License

  •00 forks•11 star•33 issues•00 pull requests•Updated Aug 4, 2025Aug 4, 2025

• bigdataviewer-core

  Public
  For Mastodon-Benchmark only: ImgLib2-based viewer for registered SPIM stacks and more

  Java

  •

  BSD 2-Clause "Simplified" License

  •4242 forks•00 stars•00 issues•00 pull requests•Updated Aug 4, 2025Aug 4, 2025

• mastodon-geff

  Public
  Geff I/O for Mastodon

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2025Jul 18, 2025

• mastodon-averoflab

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2025Apr 6, 2025

• mastodon-plugin-example

  Public
  Template / example to get you started writing your own Mastodon plugin or extension.

  Java

  •

  BSD 2-Clause "Simplified" License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 26, 2025Jan 26, 2025

• mastodon-app

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jan 26, 2025Jan 26, 2025

• .github

  Public
  Public organization profile for the Mastodon-SC organization.

  22 forks•00 stars•00 issues•00 pull requests•Updated Jan 17, 2025Jan 17, 2025

• mastodon-pasteur

  Public
  Mastodon plugins developed in the context of Pasteur users projects.

  Java

  •

  BSD 2-Clause "Simplified" License

  •22 forks•22 stars•00 issues•00 pull requests•Updated Jan 17, 2025Jan 17, 2025

• mastodon-selection-creator

  Public
  A selection creator UI for Mastodon, as a Mastodon plugin.

  Java

  •

  BSD 2-Clause "Simplified" License

  •22 forks•00 stars•22 issues•00 pull requests•Updated Jan 17, 2025Jan 17, 2025

• mastodon-sciview

  Public archive
  A bridge between Mastodon and sciview

  Java

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•77 issues•00 pull requests•Updated Oct 11, 2024Oct 11, 2024

• mastodon-collaborative

  Public archive
  Mastodon plugins to foster collaborative annotations

  Java

  •

  BSD 2-Clause "Simplified" License

  •11 fork•00 stars•1010 issues•00 pull requests•Updated Oct 11, 2024Oct 11, 2024

• mastodon-git

  Public
  A plugin for Mastodon that allows to collaborate on a project via Git.

  Java

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•1515 issues•11 pull request•Updated Oct 10, 2024Oct 10, 2024

• mastodon-example-data

  Public
  22 forks•11 star•00 issues•00 pull requests•Updated Oct 2, 2024Oct 2, 2024

• mastodon-grapher-opengl

  Public
  Java

  •11 fork•11 star•22 issues•11 pull request•Updated Sep 24, 2024Sep 24, 2024

• mastodon-ext-viewers

  Public
  Tracking data transfers from Mastodon to various viewers (e.g., sciview or Blender)

  Java

  •

  BSD 2-Clause "Simplified" License

  •11 fork•00 stars•00 issues•22 pull requests•Updated Jul 18, 2024Jul 18, 2024

• python-mastodon-importer

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •33 forks•44 stars•11 issue•00 pull requests•Updated Mar 20, 2024Mar 20, 2024

• mastodon-deploy-scripts

  Public
  Utility scripts to build, release and deploy Mastodon as an application.

  Python

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 10, 2022Nov 10, 2022

• matlab-mastodon-importer

  Public
  A MATLAB importer for Mastodon files.

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Aug 19, 2022Aug 19, 2022

• mastodon-epicure

  Public
  Toying with extending mastodon core for another application.

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 25, 2021Jul 25, 2021