Repositories list

• galaxy-tool-make-otu-table

  Public
  Python

  •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

• sdmdl

  Public
  Species Distribution Modelling using Deep Learning

  deep-learningbiodiversity-patternsecological-niche-modelling+ 1dl-sdm

  Python

  •

  MIT License

  •11•25•4•21•Updated Oct 27, 2025Oct 27, 2025

• barcode_validator

  Public
  Standardized validation of DNA barcodes

  Python

  •

  Apache License 2.0

  •5•1•4•0•Updated Oct 23, 2025Oct 23, 2025

• galaxy-tool-edentity-metabarcoding-pipeline

  Public
  Python

  •

  Apache License 2.0

  •0•1•0•1•Updated Oct 22, 2025Oct 22, 2025

• DWCAConfig

  Public
  DWCA Configuratie bestanden om data te downloaden uit ES (NBA)

  Shell

  •2•1•1•1•Updated Oct 11, 2025Oct 11, 2025

• galaxy-tool-BLAST

  Public
  A new tool and wrapper for the identification with blastn

  Python

  •2•0•2•0•Updated Oct 10, 2025Oct 10, 2025

• evobio2

  Public
  EvBio2 UL computer practicum

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 7, 2025Oct 7, 2025

• galaxy-pipeline-hybseq

  Public
  End-to-end implementation of HybSeq analysis in Naturalis's Galaxy portal

  Python

  •

  MIT License

  •1•0•1•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-spreading-correction

  Public
  galaxy wrapper for spreading-correction

  Python

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-prinseq-sequence-analysis

  Public
  transferred from old galaxy

  Shell

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-sickle-pe

  Public
  Galaxy wrapper for sickle paired-end trimming, input is a zip file

  Python

  •1•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-taxonomic-accumulation

  Public
  Use a python script to accumulate all identifications based on taxonomy.

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-UMI-isolation

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•1•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-prinseq-sequence-trimmer

  Public
  Galaxy prinseq trim tool (transferred from old galaxy)

  Shell

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-split-on-primer

  Public
  Split_on_primer tool for galaxy (transferred from old galaxy)

  Python

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-manage-zip

  Public
  Manage zip tool for galaxy (transferred from old galaxy)

  Shell

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-gz-decompress

  Public
  convert fastq.gz.zip to fastq.zip

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-nucleotide-translation

  Public
  Translate nucleotide sequences and count stop codons

  Python

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-otutab_trim

  Public
  Shell

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-flash

  Public
  Python

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-taxonmatcher

  Public
  Find for your input taxonomy the taxonomy from an other database

  Python

  •0•4•1•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-lca

  Public
  Python

  •2•3•1•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-cutadapt

  Public
  Python

  •0•1•0•0•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-add-metadata-otutable

  Public
  Python

  •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• galaxy-tools-ci-template

  Public
  0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• galaxy-tool-otu-table-freq-filter

  Public
  Frequency filter for otu tables with unique otu exception

  Python

  •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• BGE_data_processing_skimming

  Public
  BGE sample download, checksum, sample-range, plate-split; prep for MGE

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• galaxy-tool-structural-validator

  Public
  Galaxy tool for structural validation of DNA barcode data

  Apache License 2.0

  •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• galaxy-tool-beast2

  Public
  Beast2 respository for the Galaxy tool shed

  2•0•0•0•Updated Jun 6, 2025Jun 6, 2025

• mebioda

  Public
  Course repository for Methods in Biodiversity Analysis

  HTML

  •

  MIT License

  •83•22•7•0•Updated Jun 6, 2025Jun 6, 2025