Repositories list

• modules-list

  Public
  List of all the NeSI environment modules

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 2, 2026May 2, 2026

• support-docs

  Public
  NeSI Mkdocs based support pages.

  HTML

  •88 forks•1010 stars•4545 issues•88 pull requests•Updated May 2, 2026May 2, 2026

• training-environment

  Public
  Shell

  •

  MIT License

  •22 forks•22 stars•33 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• training-environment-rstudio-app

  Public
  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• nesi-ood-base

  Public
  HCL

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-pymol-app

  Public
  yMOL is a widely used, open-source molecular visualization system primarily designed for viewing and analyzing the 3D structures of proteins, nucleic acids (DNA…

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-pluto-app

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-matlab-server-app

  Public
  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-marimo-app

  Public
  Marimo is an open-source reactive notebook for Python — reproducible, git-friendly, SQL built-in, executable as a script, and shareable as an app.

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-Avogadro2-app

  Public
  Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials…

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-virtualdesktop-app

  Public
  Shell

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-codeserver-app

  Public
  HTML

  •

  MIT License

  •22 forks•00 stars•22 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-ase-app

  Public
  The Atomic Simulation Environment (ASE) is a set of tools and Python modules for setting up, manipulating, running, visualizing and analyzing atomistic simulati…

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-rstudio-server-app

  Public
  OOD RStudio-server for app on Analysis Environment (Beta)

  HTML

  •

  MIT License

  •22 forks•00 stars•55 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-jupyterlab-app

  Public
  OOD JupyterLab app for Analysis Environment (Beta)

  HTML

  •11 fork•00 stars•11 issue•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-VMD-app

  Public
  VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• nesi-ood-fluent-server-app

  Public
  OOD app for fluen

  HTML

  •

  MIT License

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• nesi-ood-OVITO-app

  Public
  OVITO is a scientific visualization and data analysis solution for atomistic and other particle-based models. It helps scientists gain meaningful and quick insi…

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• agdr-docs

  Public
  AGDR documentation pages for https://data.agdr.org.nz/.

  genomicsgaaotearoa+ 1

  genomicsgaaotearoanesi

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• intro-python

  Public
  Introduction to Python Resources

  Jupyter Notebook

  •00 forks•22 stars•22 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• reannz-containers-workshop

  Public
  Containers Workshop for REANNZ

  HTML

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 18, 2026Apr 18, 2026

• training-environment-vscode-intro2nextflow-app

  Public
  NeSI training environment VS Code with Nextflow

  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• nesi-ood-Paraview-app

  Public
  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• research-developer-cloud

  Public
  HTML

  •11 fork•33 stars•00 issues•55 pull requests•Updated Apr 15, 2026Apr 15, 2026

• nesi-mkdoc-template

  Public
  Template for NeSI mkdocs repos

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• training-environment-rstudio-rnaseq-app

  Public
  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• training-environment-jupyter-intermediate-shell-app

  Public
  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• training-environment-codeserver-app

  Public
  NeSI training environment code-server app

  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• nesi-ood-AlphaFold-app

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• eri-easyconfigs

  Public
  AgR eRI cluster easybuild easyconfig files

  00 forks•00 stars•22 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026