Repositories list

• microdraw

  Public
  Collaborative vectorial annotation tool for ultra high resolution data

  hacktoberfest

  hacktoberfest

  JavaScript

  •

  GNU General Public License v3.0

  •4343 forks•2929 stars•2626 issues•33 pull requests•Updated Aug 5, 2026Aug 5, 2026

• BrainBox

  Public
  BrainBox is a web application that lets you view, annotate and segment 3D brain imaging data in real time, collaboratively.

  hacktoberfestnaat

  hacktoberfestnaat

  JavaScript

  •

  Other

  •4949 forks•114114 stars•8787 issues•55 pull requests•Updated Aug 3, 2026Aug 3, 2026

• matchmaker

  Public
  matchmaker

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 3, 2026Jul 3, 2026

• nwl-components

  Public
  Vue components for the Neuroweblab frontend

  Vue

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• NeuroWebLab

  Public
  NeuroWebLab backend

  JavaScript

  •11 fork•33 stars•33 issues•22 pull requests•Updated Apr 4, 2026Apr 4, 2026

• thresholdmann

  Public
  A tool to apply a smoothly varying threshold to a nifti image

  hacktoberfest

  hacktoberfest

  JavaScript

  •

  ISC License

  •44 forks•44 stars•33 issues•11 pull request•Updated Jan 27, 2026Jan 27, 2026

• reorient

  Public
  A tool for reorienting and cropping MRI data

  hacktoberfest

  hacktoberfest

  JavaScript

  •

  ISC License

  •55 forks•1111 stars•00 issues•00 pull requests•Updated Jan 27, 2026Jan 27, 2026

• cookiecutter-naat-datalad

  Public
  cookiecutter template with git annex and datalad included

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2026Jan 20, 2026

• cogbases-2025

  Public
  CSS

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2025Nov 4, 2025

• neuroanatomy.github.com

  Public
  JavaScript

  •33 forks•44 stars•11 issue•00 pull requests•Updated Feb 2, 2025Feb 2, 2025

• neuroimaging-zombies-ohbm-2024

  Public
  Utilities for neuroimaging zombies project at OHBM 2024 Hackathon

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 26, 2024Jun 26, 2024

• eslint-config-naat

  Public
  Style rules for js code at NAAT

  JavaScript

  •22 forks•00 stars•55 issues•00 pull requests•Updated Apr 1, 2024Apr 1, 2024

• pli-get

  Public
  Python

  •22 forks•00 stars•00 issues•00 pull requests•Updated Dec 7, 2023Dec 7, 2023

• braindev-challenge

  Public
  Data Challenge on neurodevelopmental disorders detection

  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 4, 2023Nov 4, 2023

• cogbases-2023

  Public
  Website for the CogBases workshop - Institut Pasteur, Octobre 2023

  CSS

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 7, 2023Oct 7, 2023

• microdraw.py

  Public
  Python package for quantitative histology analyses with MicroDraw

  Python

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 3, 2023Oct 3, 2023

• GWPC

  Public
  Grey-to-White matter Percent Contrast in Autism Spectrum Disorders

  R

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 13, 2023Jun 13, 2023

• comp-cb-folding

  Public
  Diversity and evolution of cerebellar folding in mammals

  R

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 13, 2023Feb 13, 2023

• MeMoDEvo

  Public
  Mechanics, morphogenesis, development & evolution. QBio Symposium 2022

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 11, 2022Dec 11, 2022

• meshgeometry

  Public
  mesh geometry tools

  naat

  naat

  C

  •1111 forks•11 star•00 issues•00 pull requests•Updated Nov 7, 2022Nov 7, 2022

• marching_cubes

  Public
  A marching cubes implementation, using libigl

  Makefile

  •11 fork•11 star•00 issues•00 pull requests•Updated Sep 10, 2022Sep 10, 2022

• posterwall

  Public
  Code for creating deep zoom poster walls

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 12, 2022Jul 12, 2022

• autism-challenge

  Public
  Data Challenge on Autism Spectrum Disorder detection

  Jupyter Notebook

  •4242 forks•33 stars•00 issues•00 pull requests•Updated Jun 29, 2022Jun 29, 2022

• brain-covid

  Public
  Vue

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 7, 2022Feb 7, 2022

• trainable_segmentation

  Public
  A trainable segmentation interface for MicroDraw.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 24, 2021Sep 24, 2021

• brainspell2

  Public
  search engine and collaborative annotation tool for neuroimaging data

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 27, 2021Aug 27, 2021

• translucent-viewer

  Public
  A translucent viewer for neuroimaging clusters

  JavaScript

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 27, 2021Aug 27, 2021

• cmapjs

  Public
  Web-based Coactivation Map browser

  JavaScript

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 23, 2021Aug 23, 2021

• histology-db

  Public
  Building an online database for storing, curating and sharing metadata and data from diverse collections of histological data.

  00 forks•33 stars•11 issue•00 pull requests•Updated May 28, 2021May 28, 2021

• challenge-engine

  Public
  A GitHub based engine to run data challenges with distributed computing and scoring.

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2021Apr 29, 2021