Repositories list

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •44 forks•11 star•77 issues•11 pull request•Updated Jul 28, 2026Jul 28, 2026

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •22 forks•11 star•11 issue•00 pull requests•Updated Jul 28, 2026Jul 28, 2026

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •3636 forks•2020 stars•6363 issues•1919 pull requests•Updated Jul 28, 2026Jul 28, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •7171 forks•250250 stars•6363 issues•1212 pull requests•Updated Jul 27, 2026Jul 27, 2026

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •1919 forks•99 stars•55 issues•00 pull requests•Updated Jul 27, 2026Jul 27, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3838 forks•2121 stars•6161 issues•44 pull requests•Updated Jul 24, 2026Jul 24, 2026

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats…

  javametadataimage+ 7

  javametadataimageformat-readerformat-converterbio-formatslife-sciences-imagewhole-slide-imagingwsilightsheet

  Java

  •

  GNU General Public License v2.0

  •259259 forks•426426 stars•150150 issues•1818 pull requests•Updated Jul 21, 2026Jul 21, 2026

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1

  pythonnapari-pluginzarrngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2727 forks•5353 stars•3030 issues•88 pull requests•Updated Jul 21, 2026Jul 21, 2026

• omero-web-docker

  Public
  OMERO.web production docker image

  dockeromeroome+ 2

  dockeromeroomeopenmicroscopyomero-web

  Makefile

  •

  BSD 2-Clause "Simplified" License

  •2222 forks•77 stars•1414 issues•77 pull requests•Updated Jul 21, 2026Jul 21, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •5252 forks•2424 stars•2222 issues•33 pull requests•Updated Jul 21, 2026Jul 21, 2026

• ansible-role-omero-web

  Public
  Installs and configures OMERO.web and Nginx

  ansibleomeroome+ 1

  ansibleomeroomeopenmicroscopy

  Python

  •

  BSD 2-Clause "Simplified" License

  •1515 forks•22 stars•33 issues•11 pull request•Updated Jul 20, 2026Jul 20, 2026

• ansible-role-omero-server

  Public
  Installs and configures OMERO.server

  ansibleserverrole+ 1

  ansibleserverroleomero

  Python

  •

  BSD 2-Clause "Simplified" License

  •1414 forks•55 stars•77 issues•44 pull requests•Updated Jul 20, 2026Jul 20, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2727 forks•66 stars•1616 issues•11 pull request•Updated Jul 17, 2026Jul 17, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •7373 forks•166166 stars•105105 issues•1010 pull requests•Updated Jul 17, 2026Jul 17, 2026

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. …

  pythonjavaimage+ 3

  pythonjavaimagedatabaseserveromero

  Java

  •

  GNU General Public License v2.0

  •105105 forks•219219 stars•2626 issues•1313 pull requests•Updated Jul 16, 2026Jul 16, 2026

• devspace

  Public
  Continuous integration tool for OME projects

  dockerjenkinscontinuous-integration+ 2

  dockerjenkinscontinuous-integrationomerodevs

  Shell

  •1818 forks•1919 stars•2121 issues•44 pull requests•Updated Jul 14, 2026Jul 14, 2026

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •44 forks•22 stars•00 issues•11 pull request•Updated Jul 13, 2026Jul 13, 2026

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •1010 forks•99 stars•66 issues•44 pull requests•Updated Jul 13, 2026Jul 13, 2026

• omero-cli-zarr

  Public
  omerozarrngff+ 1

  omerozarrngffome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •1111 forks•2222 stars•2323 issues•1111 pull requests•Updated Jul 13, 2026Jul 13, 2026

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •77 forks•55 stars•33 issues•33 pull requests•Updated Jul 13, 2026Jul 13, 2026

• ome-metakit

  Public
  Library for reading Metakit database files

  metakit

  metakit

  Java

  •

  GNU General Public License v2.0

  •77 forks•33 stars•00 issues•11 pull request•Updated Jul 10, 2026Jul 10, 2026

• .github

  Public
  Community health files for the @OME organization

  secworkflow-templates

  secworkflow-templates

  33 forks•22 stars•11 issue•00 pull requests•Updated Jul 8, 2026Jul 8, 2026

• omero-model

  Public
  Gradle project for generating model jar for OMERO

  librarycomponentgradle+ 3

  librarycomponentgradlemodeljaromero

  Java

  •

  GNU General Public License v2.0

  •1313 forks•00 stars•99 issues•11 pull request•Updated Jul 6, 2026Jul 6, 2026

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5

  javaapibuildsdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •1010 forks•11 star•1515 issues•22 pull requests•Updated Jul 6, 2026Jul 6, 2026

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •1515 forks•00 stars•3131 issues•11 pull request•Updated Jul 6, 2026Jul 6, 2026

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1

  componentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •1010 forks•00 stars•22 issues•00 pull requests•Updated Jul 6, 2026Jul 6, 2026

• omero-romio

  Public
  Gradle project for the ROMIO library of OMERO

  libraryjario+ 1

  libraryjarioomero

  Java

  •

  GNU General Public License v2.0

  •1313 forks•00 stars•22 issues•11 pull request•Updated Jul 6, 2026Jul 6, 2026

• omero-common

  Public
  Gradle project containing common utilities for OMERO

  libraryutilomero

  libraryutilomero

  Java

  •

  GNU General Public License v2.0

  •1111 forks•11 star•00 issues•11 pull request•Updated Jul 6, 2026Jul 6, 2026

• governance

  Public
  Source repository for OME governance charters, rosters, policies and other community documents

  open-sourcecommunityopen-science+ 4

  open-sourcecommunityopen-sciencemicroscopygovernanceomebioimaging

  55 forks•22 stars•11 issue•11 pull request•Updated Jul 3, 2026Jul 3, 2026

• ngff-spec

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python

  •1616 forks•1414 stars•1414 issues•66 pull requests•Updated Jul 3, 2026Jul 3, 2026