Repositories list

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•1•1•Updated Apr 3, 2026Apr 3, 2026

• ngff-spec

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python

  •9•11•8•9•Updated Apr 2, 2026Apr 2, 2026

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •35•20•61•19•Updated Apr 2, 2026Apr 2, 2026

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •10•0•0•3•Updated Apr 2, 2026Apr 2, 2026

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •5•1•6•0•Updated Apr 2, 2026Apr 2, 2026

• omero-web-apps-examples

  Public template
  Example Setup for Web Apps

  Python

  •4•1•2•17•Updated Apr 2, 2026Apr 2, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •65•155•114•12•Updated Apr 1, 2026Apr 1, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •52•24•22•3•Updated Apr 1, 2026Apr 1, 2026

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1

  componentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •10•0•2•1•Updated Mar 31, 2026Mar 31, 2026

• omero-romio

  Public
  Gradle project for the ROMIO library of OMERO

  libraryjario+ 1

  libraryjarioomero

  Java

  •

  GNU General Public License v2.0

  •13•0•3•1•Updated Mar 31, 2026Mar 31, 2026

• omero-common

  Public
  Gradle project containing common utilities for OMERO

  libraryutilomero

  libraryutilomero

  Java

  •

  GNU General Public License v2.0

  •11•1•0•1•Updated Mar 31, 2026Mar 31, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •66•229•64•12•Updated Mar 30, 2026Mar 30, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •26•6•15•2•Updated Mar 30, 2026Mar 30, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •38•20•59•3•Updated Mar 26, 2026Mar 26, 2026

• omero-model

  Public
  Gradle project for generating model jar for OMERO

  librarycomponentgradle+ 3

  librarycomponentgradlemodeljaromero

  Java

  •

  GNU General Public License v2.0

  •13•0•9•0•Updated Mar 26, 2026Mar 26, 2026

• ansible-role-postgresql-client

  Public
  Install PostgreSQL clients from the upstream distribution

  clientansiblepostgresql+ 1

  clientansiblepostgresqlrole

  Jinja

  •

  BSD 2-Clause "Simplified" License

  •8•3•0•0•Updated Mar 25, 2026Mar 25, 2026

• omero_search_engine

  Public
  App which is used to search metadata (key-value pairs)

  Python

  •

  GNU General Public License v2.0

  •5•3•15•4•Updated Mar 25, 2026Mar 25, 2026

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •19•9•3•1•Updated Mar 25, 2026Mar 25, 2026

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5

  javaapibuildsdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •10•1•15•2•Updated Mar 25, 2026Mar 25, 2026

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 2

  pythoncomponentlibomeroomero-py

  Python

  •

  GNU General Public License v2.0

  •35•28•56•6•Updated Mar 25, 2026Mar 25, 2026

• presentations

  Public
  HTML-based presentations from the OME team.

  htmlreveal-jspresentations

  htmlreveal-jspresentations

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •19•0•0•0•Updated Mar 25, 2026Mar 25, 2026

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1

  pythonnapari-pluginzarrngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •24•46•30•4•Updated Mar 25, 2026Mar 25, 2026

• omero-rois

  Public
  OMERO python ROI utils

  pythonomero

  pythonomero

  Python

  •

  GNU General Public License v2.0

  •7•3•2•1•Updated Mar 25, 2026Mar 25, 2026

• ansible-role-omero-searchengine

  Public
  Python

  •1•0•0•0•Updated Mar 24, 2026Mar 24, 2026

• omero-server

  Public
  Gradle project containing main server logic for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •14•8•36•3•Updated Mar 24, 2026Mar 24, 2026

• EMBL-EBI-imaging-course-03-2026

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •2•1•0•1•Updated Mar 22, 2026Mar 22, 2026

• bio-formats-examples

  Public
  Examples of usage of the Bio-Formats API

  apigradlemaven+ 2

  apigradlemavenexamplesbio-formats

  Java

  •

  Other

  •19•13•0•0•Updated Mar 18, 2026Mar 18, 2026

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats…

  javametadataimage+ 7

  javametadataimageformat-readerformat-converterbio-formatslife-sciences-imagewhole-slide-imagingwsilightsheet

  Java

  •

  GNU General Public License v2.0

  •253•416•162•9•Updated Mar 18, 2026Mar 18, 2026

• ansible-role-omero-ms-image-region

  Public
  Jinja

  •4•0•0•0•Updated Mar 17, 2026Mar 17, 2026

• omero-cli-server

  Public
  CLI plugin for managing an OMERO.server

  Python

  •

  GNU General Public License v2.0

  •3•1•0•4•Updated Mar 16, 2026Mar 16, 2026