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@parisepigenetics UMR7216 Epigenetics and Cell Fate

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    19 repositories

    • bibs

      Public
      BiBs 2022
      HTML
      •2•1•0•0•Updated Feb 2, 2026Feb 2, 2026

    • great_3d

      Public
      A tool for the analysis and visualisation of 3d genome structure, epigenetics and gene expression.
      Python
      •
      GNU General Public License v3.0
      •2•4•1•0•Updated Jan 15, 2026Jan 15, 2026

    • Translatome_Bcells_glucose

      Public
      R
      •0•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • RASflow_EDC

      Public
      RNAseq analysis workflow, maintained by BiBs facility.
      Python
      •
      GNU General Public License v3.0
      •1•3•2•0•Updated Nov 27, 2024Nov 27, 2024

    • Methylator-Documentation

      Public
      User documentation for Methylator workflow
      1•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • rna_feat_ext

      Public
      Software tools to extract mRNA's features from a list of ENSEMBL gene IDs.
      bioinformaticsbioinformatics-scripts
      Python
      •
      GNU General Public License v3.0
      •1•2•2•0•Updated Jan 17, 2024Jan 17, 2024

    • setdb1-downstream-anal

      Public
      Repository for the downstream analysis of the STEDB1 KO, CA, AA and NLS experiments.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • pyna-colada

      Public
      Pina colada is a python application using 'straw' and 'juice-tools' to provide an more useful API to work with .hic Hi-C experiments files.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • dmd_TGFb_SETDB1

      Public
      All the computational analysis files, scripts and notebooks for the DMD study of TGFb and SETDB1
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 21, 2023Nov 21, 2023

    • cluster_training

      Public
      TeX
      •0•0•0•0•Updated Jun 2, 2023Jun 2, 2023

    • EPIC_ChAMP

      Public
      R
      •0•0•0•0•Updated May 5, 2023May 5, 2023

    • nf-core_configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •339•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • DBO

      Public
      Desing of Bridging Oligos
      JavaScript
      •0•0•0•0•Updated Sep 23, 2022Sep 23, 2022

    • ATAC-seq

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Sep 6, 2022Sep 6, 2022

    • riboproanalysis

      Public
      A comprehensive, best practices, pipeline for Ribo-seq experiments data analysis
      shelldockerbioinformatics-pipeline
      Shell
      •1•2•0•0•Updated May 6, 2022May 6, 2022

    • motif_scan

      Public
      Python script for scanning RNA-binding protein motifs
      Python
      •3•2•0•0•Updated May 6, 2022May 6, 2022

    • Hello-World

      Public
      0•1•0•0•Updated Jul 13, 2018Jul 13, 2018

    • dockerfiles

      Public
      Shell
      •23•0•0•0•Updated Jul 6, 2018Jul 6, 2018

    • bigData_Biclustering

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 29, 2018Mar 29, 2018