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    28 repositories

    • stLENS

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Feb 23, 2026Feb 23, 2026

    • variant-aware-cas-offinder

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•2•0•1•Updated Feb 23, 2026Feb 23, 2026

    • stLENS-tutorials

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • dari

      Public
      Svelte
      •
      MIT License
      •0•1•0•0•Updated Feb 22, 2026Feb 22, 2026

    • colab-tools

      Public
      Svelte
      •1•2•0•0•Updated Feb 12, 2026Feb 12, 2026

    • solomicrobe-rtd

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • rgen-toolkit

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • readretro-website

      Public
      READRetro website
      Svelte
      •
      Other
      •2•2•1•0•Updated Nov 28, 2025Nov 28, 2025

    • ssam

      Public
      SSAM (Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation)
      Python
      •
      Other
      •1•5•0•0•Updated Nov 25, 2025Nov 25, 2025

    • pyoncoprint

      Public
      Python OncoPrint library based on Matplotlib
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •6•25•3•0•Updated Sep 23, 2025Sep 23, 2025

    • spatial-omics-tutorials

      Public
      Jupyter Notebook
      •0•5•0•0•Updated Jul 25, 2025Jul 25, 2025

    • variant-aware-cas-offinder-benchmark

      Public
      Python
      •0•0•0•0•Updated Mar 23, 2025Mar 23, 2025

    • SSAM-SpatialData

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Sep 9, 2024Sep 9, 2024

    • freebayes-docker

      Public
      Dockerfile
      •
      MIT License
      •1•0•0•0•Updated Jul 17, 2024Jul 17, 2024

    • ssam-google-colab

      Public
      A temporary fix for google colab - soon removed
      Python
      •
      Other
      •11•0•0•0•Updated Apr 18, 2024Apr 18, 2024

    • bohun_interface

      Public
      Svelte
      •0•0•0•0•Updated Apr 7, 2024Apr 7, 2024

    • cas-offinder-rust

      Public
      Testing at the moment, not working yet
      Rust
      •
      GNU Affero General Public License v3.0
      •1•0•1•0•Updated Mar 15, 2024Mar 15, 2024

    • pnucolab.github.io

      Public
      JavaScript
      •
      MIT License
      •0•0•0•7•Updated Jan 18, 2024Jan 18, 2024

    • MITObim

      Public
      MITObim fork for rootless docker
      Perl
      •
      MIT License
      •34•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • cas-database-pipeline

      Public
      A pipeline to find off-targets to build a new Cas-Database
      Python
      •0•0•0•0•Updated Apr 23, 2023Apr 23, 2023

    • pyrsfish

      Public
      python reimplementation of rsfish
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 1, 2023Apr 1, 2023

    • git-tutorial

      Public
      git tutorial @ pnucolab 2022
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Nov 9, 2022Nov 9, 2022

    • kr-to-eng-translation-bot

      Public
      for Zulip!
      Python
      •1•0•0•0•Updated Oct 15, 2022Oct 15, 2022

    • Spadoma

      Public
      Spatial Domain analysis(Spadoma)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Oct 14, 2022Oct 14, 2022

    • cas-offinder-2

      Public
      An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
      C++
      •
      Other
      •31•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • powerlevel10k

      Public
      zsh customization (p10k configure) Error removed
      Shell
      •
      MIT License
      •2.4k•0•0•0•Updated Jul 28, 2022Jul 28, 2022

    • cas-analyzer_py

      Public
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 25, 2022Jul 25, 2022

    • cas-analyzer

      Public
      Full JavaScript-based assessment tool for targeted sequencing data of genome-edited samples.
      CoffeeScript
      •
      Other
      •4•0•0•0•Updated Nov 8, 2016Nov 8, 2016