Skip to content

@raeslab Raes Lab

Change the repository type filter

All

    Repositories list

    25 repositories

    • Webservices-tester

      Public
      A test script to check operational status of various webservices used in our questionnaires. Triggered daily using GitHub Actions.
      Python
      •
      Other
      •0•0•0•0•Updated Jan 21, 2026Jan 21, 2026

    • ckd-ghent

      Public
      R
      •
      Other
      •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • ColdSnap

      Public
      The ColdSnap framework allows for training/testing data as well as machine learning models to be "frozen" aka serialized to disk.
      pythonmachine-learningscikit-learn
      Python
      •
      Other
      •0•0•1•0•Updated Jan 8, 2026Jan 8, 2026

    • codegen-ms

      Public
      webservice to generate participant codes in line with our workflow
      Python
      •
      Other
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • medical-ms

      Public
      Flask based webservice to validate GP credentials and provide typeahead for diseases and medication
      Python
      •
      Other
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • bpost-ms

      Public
      flask based webservice to validate Belgian addresses
      HTML
      •
      Other
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • lorepy

      Public
      A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)
      pythonpandaspython3matplotlibdatavisualization
      Python
      •
      Other
      •2•16•2•0•Updated Jan 5, 2026Jan 5, 2026

    • dyspyosis

      Public
      A python package to calculate the dysbiosis score in microbiome datasets
      pythonpackagedata-sciencedeep-learningneural-networkmicrobiomemicrobiome-analysis
      Python
      •
      Other
      •1•1•1•0•Updated Jan 1, 2026Jan 1, 2026

    • loreplotr

      Public
      Logistic regression plots in R
      R
      •
      Other
      •1•1•3•0•Updated Jan 1, 2026Jan 1, 2026

    • prodiphy

      Public
      A python package with a number of probabilistic models (PyMC) to compare (sub-)populations
      Python
      •
      Other
      •1•1•0•0•Updated Dec 19, 2025Dec 19, 2025

    • RLdbRDA

      Public
      The RaesLab's implementation of a distance based Redundancy Analysis (dbRDA)
      R
      •
      Other
      •1•4•1•0•Updated Dec 11, 2025Dec 11, 2025

    • QMP-Microbiome-CRC-confounders

      Public
      Scripts for the manuscript "Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages"
      HTML
      •
      MIT License
      •0•5•0•0•Updated Jul 29, 2024Jul 29, 2024

    • Tara-Oceans-Plankton-Interactome

      Public
      Supplemental data and website for Lima-Mendez, G., et al. (2015). Determinants of community structure in the global plankton interactome Science, 348(6237).
      microbiomeplanktonocean-sciences
      0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • Tara-Oceans-Plankton-Networks

      Public
      Supplemental data and website for Guidi, L., et al. (2016). Plankton networks driving carbon export in the oligotrophic ocean, Nature.
      microbiomeplanktonocean-sciences
      0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • mocat2

      Public
      Latest MOCAT2 version
      Perl
      •
      GNU General Public License v3.0
      •14•0•0•0•Updated May 30, 2024May 30, 2024

    • Enterotype-prediction-based-on-the-life-history

      Public
      Machine learning classification pipe-line used for the study "Long-term life history predicts current elderly gut microbiome"
      rmicrobiologymicrobiome
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 19, 2022Jul 19, 2022

    • covid19_respiratory_microbiome

      Public
      Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"
      R
      •
      GNU General Public License v3.0
      •3•4•1•0•Updated Sep 23, 2021Sep 23, 2021

    • benchmark_microbiome_transformations

      Public
      Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
      R
      •
      GNU General Public License v3.0
      •3•8•0•0•Updated May 5, 2021May 5, 2021

    • QMP

      Public
      Quantitative Microbiome Profiling
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •9•15•1•0•Updated Mar 13, 2021Mar 13, 2021

    • temporal_variability_microbiome_qmp

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 9, 2021Mar 9, 2021

    • fgfp-gwas

      Public
      Replication Cookbook for FGFP GWAS
      R
      •6•0•0•0•Updated Jul 13, 2020Jul 13, 2020

    • BMIS

      Public
      R
      •0•1•0•0•Updated Nov 13, 2019Nov 13, 2019

    • omixer-rpm

      Public
      A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
      metagenomicspathway-analysismetabolic-reconstruction
      Java
      •
      Other
      •8•27•1•0•Updated Nov 21, 2018Nov 21, 2018

    • GMMs

      Public
      A manually curated database of human gut metabolic modules.
      metagenomicspathway-analysismetabolic-reconstruction
      Other
      •5•17•1•0•Updated Jul 27, 2018Jul 27, 2018

    • raeslab-utils

      Public
      Python
      •
      GNU General Public License v3.0
      •2•4•0•0•Updated Jul 18, 2018Jul 18, 2018