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@regulatory-genomics Computational and Regulatory Genomics Lab

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    16 repositories

    • hic_sm

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • precellar

      Public
      Universal Single-Cell Genomics Preprocessing package
      Rust
      •3•49•3•2•Updated Feb 21, 2026Feb 21, 2026

    • launch-code-server

      Public
      Python
      •1•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • RNA-sm

      Public
      RNA-seq snakemake pipeline
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 25, 2026Jan 25, 2026

    • ATAC-sm

      Public
      Snakemake pipeline for ATAC-seq
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • bwa-mem2-rust

      Public
      Rust
      •3•3•0•1•Updated Jan 4, 2026Jan 4, 2026

    • cuttag_sm

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 3, 2026Jan 3, 2026

    • regulatory-genomics.github.io

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • star-aligner

      Public
      C
      •2•1•0•1•Updated Oct 2, 2025Oct 2, 2025

    • genomics-dataloader

      Public
      Utilities for loading genomics data in PyTorch
      Rust
      •1•6•0•0•Updated Sep 6, 2025Sep 6, 2025

    • regbench_data

      Public
      Python
      •0•2•0•0•Updated Sep 5, 2025Sep 5, 2025

    • genomics-model-zoo

      Public
      A collection of pre-trained genomics models
      Python
      •0•1•0•0•Updated Aug 24, 2025Aug 24, 2025

    • file-download

      Public
      Rust
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • sc-bench

      Public
      Rust
      •
      MIT License
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • bwa-rust

      Public
      Rust
      •1•2•3•0•Updated Sep 13, 2024Sep 13, 2024

    • pandoc-crossref

      Public
      Pandoc filter for cross-references
      Haskell
      •
      GNU General Public License v2.0
      •78•0•0•0•Updated Sep 24, 2023Sep 24, 2023
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