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@sidataplus Siriraj Informatics and Data Innovation Center (SiData+)

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    27 repositories

    • athena2duckdb

      Public
      Convert an extracted OMOP vocabulary download from OHDSI Athena into a ready-to-query DuckDB file
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 6, 2026Apr 6, 2026

    • THIRAWAT-mapper

      Public
      Terminology Harmonization using Late-Interaction Reranker With Alignment-tuned Transformers
      Python
      •1•2•0•0•Updated Feb 25, 2026Feb 25, 2026

    • fast-plaid

      Public
      High-Performance Engine for Multi-Vector Search
      Rust
      •
      MIT License
      •20•0•0•0•Updated Nov 29, 2025Nov 29, 2025

    • omop_dm_cohort

      Public
      Building T2DM patient cohort from data structured in OMOP CDM v5.4
      Jupyter Notebook
      •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • UMLS-to-DuckDB

      Public
      Convert the Unified Medical Language System (UMLS) data from RRF files to DuckDB format
      Shell
      •
      Other
      •0•0•0•0•Updated Jul 19, 2025Jul 19, 2025

    • demo-etl-sqlmesh-omop-synthea

      Public
      Quickstart demo to show how to use SQLMesh to ETL Synthea data to OMOP CDM
      PLpgSQL
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • Hades

      Public
      Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
      R
      •
      Apache License 2.0
      •16•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • omop-book

      Public
      OMOP CDM & OHDSI in Thailand
      omop
      omop
      TeX
      •0•4•0•1•Updated Jun 14, 2025Jun 14, 2025

    • meds_etl

      Public
      A collection of ETLs from common data formats to Medical Event Data Standard
      Python
      •
      Apache License 2.0
      •14•0•0•1•Updated Jun 10, 2025Jun 10, 2025

    • dagster-de-test-2025

      Public
      Take-home exam for junior Data Engineering candidates.
      Python
      •13•1•0•0•Updated Mar 31, 2025Mar 31, 2025

    • DataQualityDashboard

      Public
      A tool to help improve data quality standards in observational data science.
      JavaScript
      •
      Apache License 2.0
      •107•0•0•0•Updated Dec 25, 2024Dec 25, 2024

    • demo-etl-sqlmesh-omop

      Public
      The OMOP implementation on SQLMesh for the demo at the OHDSI Symposium 2024.
      Dockerfile
      •4•5•5•0•Updated Dec 4, 2024Dec 4, 2024

    • siriraj_ht_cohort

      Public
      Building HT patient cohort from data structured in OMOP CDM v5.4
      Python
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • PASAR_ETL_Spec

      Public
      0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • omop-vocab-loader

      Public
      Load OHDSI Vocab from Athena into PostgreSQL DB
      omop
      omop
      Python
      •
      Apache License 2.0
      •1•4•3•3•Updated Aug 2, 2024Aug 2, 2024

    • Migration-Issue-Ops-Template

      Public
      0•0•2•0•Updated Jul 25, 2024Jul 25, 2024

    • Dagster_ETL_DE

      Public
      Python
      •1•0•0•0•Updated Mar 8, 2024Mar 8, 2024

    • airtable-streamlit

      Public
      Access Airtable data via Streamlit
      Python
      •
      MIT License
      •0•1•0•5•Updated Feb 7, 2024Feb 7, 2024

    • demo-dagster-sling

      Public archive
      Demonstration of a simple ELT pipeline with Sling and Dagster
      Python
      •1•1•0•0•Updated Dec 2, 2023Dec 2, 2023

    • ETL-Synthea-dbt

      Public
      1•1•0•0•Updated Oct 1, 2023Oct 1, 2023

    • omop-core

      Public
      Part of OMOP NHSO TCELS project
      omop
      omop
      Dockerfile
      •0•0•10•0•Updated Sep 30, 2023Sep 30, 2023

    • omop_linkage_dbt

      Public
      Facilitate the linkage of OMOP CDM databases from different sources
      omop
      omop
      Apache License 2.0
      •0•2•0•0•Updated Sep 27, 2023Sep 27, 2023

    • csv-hasher

      Public
      Hash a selected column from a CSV file
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • pdpa

      Public
      Thai PDPA Website (Unofficial)
      thaipdpa
      thaipdpa
      JavaScript
      •
      MIT License
      •5•11•0•3•Updated Jun 10, 2023Jun 10, 2023

    • auto-report-generator

      Public
      Automatically generate filled-in reports in PDF with data from MS SQL using Mail Merge & Python
      Python
      •
      MIT License
      •0•0•0•5•Updated Feb 20, 2023Feb 20, 2023

    • streamlit-heroku-template

      Public template
      a simple template for deploying a Streamlit app on Heroku
      herokutemplatestreamlit
      herokutemplatestreamlit
      Python
      •1•0•0•5•Updated Jan 2, 2023Jan 2, 2023

    • demo-etl-dbt-omop

      Public
      The work of OMOP on the dbt for demo in OHDSI Symposium 2022
      omop
      omop
      Python
      •1•3•0•0•Updated Oct 23, 2022Oct 23, 2022
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