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@smaht-dac SMaHT Data Analysis Center

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    22 repositories

    • smaht-portal

      Public
      SMaHT Data Analysis Center Web Portal
      JavaScript
      •
      MIT License
      •0•3•0•23•Updated Jan 9, 2026Jan 9, 2026

    • main-pipelines

      Public
      main repository for SMaHT pipelines
      Dockerfile
      •
      GNU General Public License v3.0
      •0•2•0•1•Updated Jan 8, 2026Jan 8, 2026

    • sentieon-pipelines

      Public
      sentieon components for analysis pipelines
      Shell
      •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • calling-pipelines

      Public
      components for variant calling pipelines
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • shared-pipelines

      Public
      shared components for analysis pipelines
      Common Workflow Language
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Dec 23, 2025Dec 23, 2025

    • submitr

      Public
      Python
      •
      MIT License
      •0•0•1•3•Updated Dec 11, 2025Dec 11, 2025

    • foursight-smaht

      Public
      foursight for smaht-portal
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 24, 2025Nov 24, 2025

    • qc-pipelines

      Public
      components for quality control pipelines
      Common Workflow Language
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • pipelines-docs

      Public
      pipelines documentation
      1•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • rnaseq-pipelines

      Public
      components for RNA-seq pipelines
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 12, 2025Sep 12, 2025

    • smaht-pipeline-utils

      Public
      pipeline utilities
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • qc-parser

      Public
      Parses outputs of different QC tools and unifies them for the SMaHT portal
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • pipelines-scripts

      Public
      Python
      •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • dmichaels-utils

      Public
      dmichaels-utils
      Python
      •
      Other
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • alignment-pipelines

      Public
      components for alignment pipelines
      Common Workflow Language
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • encoded-core

      Public
      Repository for data models common to Park Lab ENCODE style projects
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • o2-processing-utils

      Public
      Tool for running and logging a couple of bioinformatics tools on O2 (HMS' HPC).
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • higlass-misc

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Dec 4, 2023Dec 4, 2023

    • submitr-save

      Public
      This repo has been superseded. Do not use it. Ask David, Kent, or Will if you have questions.
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 26, 2023Sep 26, 2023

    • temporary-test-repo-A-forked

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • dmichaels-temporary-experiment-of-import

      Public
      New submitr repo which will be an import of SubmitCGAP rather than a fork (will rename later)
      0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • smaht-dac-governance

      Public
      Governance, legal and policy information related to the SMaHT DAC's various tools and applications
      MIT License
      •2•0•0•0•Updated Sep 5, 2023Sep 5, 2023