Repositories list

• omop-cdm

  Public
  SQLAlchemy definition of the OHDSI OMOP CDM

  Python

  •

  Apache License 2.0

  •00 forks•55 stars•00 issues•22 pull requests•Updated Apr 9, 2026Apr 9, 2026

• vulnerability-scanning

  Public
  GitHub action to report vulnerabilities as issues

  Python

  •

  MIT License

  •00 forks•00 stars•22 issues•11 pull request•Updated Apr 9, 2026Apr 9, 2026

• platform-output-support

  Public
  POS is an automatic and unified place to perform a release of OT Platform to the public

  Python

  •44 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• amazing-planning-generator

  Public
  Generate the weekly planning from and to a Google spreadsheet.

  Python

  •00 forks•11 star•00 issues•22 pull requests•Updated Apr 8, 2026Apr 8, 2026

• platform-api

  Public
  GraphQL and Rest API rewrite of the current Open Targets platform API

  Scala

  •

  Apache License 2.0

  •99 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• ot-ui-apps

  Public
  TypeScript

  •

  Apache License 2.0

  •1818 forks•11 star•00 issues•1919 pull requests•Updated Apr 8, 2026Apr 8, 2026

• kotobuki

  Public
  Update Usagi mappings with kotobuki

  pythonetlohdsi+ 3

  pythonetlohdsiomopusagiomop-cdm

  Python

  •

  Apache License 2.0

  •00 forks•33 stars•00 issues•22 pull requests•Updated Mar 30, 2026Mar 30, 2026

• thehaive-website

  Public
  Static single page website.

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 25, 2026Mar 25, 2026

• ot-ai-api

  Public
  JavaScript

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•66 pull requests•Updated Mar 19, 2026Mar 19, 2026

• v6-omop-cohort-diagnostics

  Public
  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• caciocavallo

  Public
  headless Swing UI testing

  Java

  •

  GNU General Public License v2.0

  •2929 forks•00 stars•00 issues•00 pull requests•Updated Mar 6, 2026Mar 6, 2026

• OHDSI-Usagi

  Public
  Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.

  Java

  •3535 forks•00 stars•00 issues•11 pull request•Updated Mar 5, 2026Mar 5, 2026

• CohortDiagnosticsVignette

  Public
  An R package for performing various cohort diagnostics.

  R

  •5555 forks•00 stars•00 issues•00 pull requests•Updated Feb 4, 2026Feb 4, 2026

• react-json-to-table

  Public
  react-json-to-table

  TypeScript

  •

  GNU General Public License v3.0

  •3030 forks•3838 stars•1414 issues•99 pull requests•Updated Feb 3, 2026Feb 3, 2026

• fair-package-registry

  Public
  FAIR Package Registry PoC by the Dutch Health Care Institute and The Hyve

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 12, 2025Dec 12, 2025

• opentargets-mcp

  Public
  MCP server for Open Targets Data

  Python

  •

  MIT License

  •99 forks•00 stars•00 issues•00 pull requests•Updated Dec 10, 2025Dec 10, 2025

• OHDSI-WhiteRabbit

  Public
  WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with Rabbi…

  Java

  •

  Apache License 2.0

  •9999 forks•00 stars•00 issues•33 pull requests•Updated Dec 2, 2025Dec 2, 2025

• w3id.org

  Public
  Website source code for w3id.org.

  HTML

  •1.6k1.6k forks•00 stars•00 issues•00 pull requests•Updated Dec 2, 2025Dec 2, 2025

• BioCypher-OT

  Public
  Python

  •

  MIT License

  •88 forks•22 stars•00 issues•00 pull requests•Updated Oct 2, 2025Oct 2, 2025

• biochatter

  Public
  Backend library for conversational AI in biomedicine

  Jupyter Notebook

  •

  MIT License

  •5656 forks•00 stars•00 issues•22 pull requests•Updated Sep 3, 2025Sep 3, 2025

• cbioportal-frontend

  Public
  React Frontend of cBioPortal :tada:

  TypeScript

  •

  GNU Affero General Public License v3.0

  •426426 forks•00 stars•00 issues•1515 pull requests•Updated Sep 1, 2025Sep 1, 2025

• fairspace

  Public archive
  Fairspace provides a secure environment for managing research data.

  metadatardfwebdav+ 3

  metadatardfwebdavfairresearch-datafairspace

  JavaScript

  •

  Apache License 2.0

  •66 forks•1414 stars•00 issues•44 pull requests•Updated Aug 13, 2025Aug 13, 2025

• biochatter-server

  Public
  Flask server for BioChatter integration into web apps

  Python

  •

  MIT License

  •1010 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2025Aug 5, 2025

• v6-basic-omop-queries

  Public
  vantage6

  vantage6

  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated May 8, 2025May 8, 2025

• synthetic-breast-cancer-OMOP-database

  Public
  OMOP database for IKNL synthetic breast cancer dataset

  PLpgSQL

  •33 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2025May 4, 2025

• genetics-pipe

  Public
  Scala

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2025Apr 30, 2025

• cbioportal

  Public
  cBioPortal topic branches at The Hyve

  cbioportal

  cbioportal

  Java

  •

  GNU Affero General Public License v3.0

  •850850 forks•33 stars•00 issues•00 pull requests•Updated Apr 10, 2025Apr 10, 2025

• report-vulnerability-image

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2025Apr 7, 2025

• report-vulnerability

  Public
  Github action for reporting a vulnerability

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2025Apr 7, 2025

• gentropy

  Public
  Open Targets python framework for post-GWAS analysis

  Jupyter Notebook

  •

  Apache License 2.0

  •1515 forks•00 stars•11 issue•33 pull requests•Updated Apr 3, 2025Apr 3, 2025