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    • strfPy

      Public
      Python Version of Direct Fit Algorithm for STRF Estimation
      Jupyter Notebook
      2200Updated Feb 11, 2026Feb 11, 2026
    • soundsep2

      Public
      Sound separation gui
      Python
      0640Updated Feb 5, 2026Feb 5, 2026
    • soundsig

      Public
      BioSound and other Sound Signal Processing routines.
      Python
      103233Updated Nov 8, 2025Nov 8, 2025
    • Auditory Neuroscience Lab at UC Berkeley
      HTML
      0100Updated Sep 27, 2025Sep 27, 2025
    • Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
      Python
      266100Updated Jul 16, 2025Jul 16, 2025
    • Data and Code for "Categorical and semantic perception of the meaning of call-types in zebra finches" by Elie et al.
      Jupyter Notebook
      0000Updated Jul 3, 2025Jul 3, 2025
    • Code for extracting biosound acoustic features for the whole database of vocalizations
      Jupyter Notebook
      0000Updated Jul 2, 2025Jul 2, 2025
    • pyoperant

      Public
      python package for operant conditioning
      Python
      15002Updated Mar 13, 2025Mar 13, 2025
    • Pecking test data analysis
      Python
      0000Updated Mar 4, 2025Mar 4, 2025
    • himalaya

      Public
      Multiple-target linear models - CPU/GPU
      Python
      18000Updated Feb 22, 2025Feb 22, 2025
    • For documentation of lab things: onboarding, network setup, software installation...
      Jupyter Notebook
      0000Updated Jan 24, 2025Jan 24, 2025
    • A Python-based module for creating flexible and robust spike sorting pipelines.
      Python
      244000Updated Nov 4, 2024Nov 4, 2024
    • Kilosort

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      Python
      280000Updated Oct 13, 2024Oct 13, 2024
    • crcns

      Public
      Course materials for the CRCNS summer course in computational neuroscience
      Jupyter Notebook
      2500Updated Aug 21, 2024Aug 21, 2024
    • Reusable implant for chronic electrophysiological recordings using Cambridge Neurotech Mini-Amp and silicon probes.
      0010Updated Jul 4, 2024Jul 4, 2024
    • Feeder for operant task during electrophysiological recordings
      0000Updated Jun 7, 2024Jun 7, 2024
    • Spike Sorting
      Python
      1300Updated Jun 5, 2024Jun 5, 2024
    • Python, R Code and Data for Corvin et al.
      Jupyter Notebook
      0000Updated May 31, 2024May 31, 2024
    • WIP: Python port of Kilosort2
      Python
      26000Updated Nov 28, 2023Nov 28, 2023
    • Python
      2310Updated Sep 5, 2023Sep 5, 2023
    • Tutorials to learn how to use BioSound (from soundsig)
      Jupyter Notebook
      12520Updated May 8, 2023May 8, 2023
    • HTML
      0000Updated Mar 11, 2023Mar 11, 2023
    • PHP
      0000Updated Mar 11, 2023Mar 11, 2023
    • Jupyter Notebook
      0000Updated Mar 6, 2023Mar 6, 2023
    • strflab

      Public
      STRFLAB! A newer tool for fitting spatio-temporal receptive fields.
      MATLAB
      4900Updated Mar 2, 2023Mar 2, 2023
    • The onboarding instructions for URAP. Public repo.
      0100Updated Jan 27, 2023Jan 27, 2023
    • Easy access of Google Drive files via Python functions
      Python
      0710Updated Jul 9, 2022Jul 9, 2022
    • minian

      Public
      miniscope analysis pipeline with interactive visualizations
      Python
      47000Updated Jun 22, 2022Jun 22, 2022
    • Jupyter Notebook
      0001Updated Jun 22, 2022Jun 22, 2022
    • soundsep

      Public
      Sound detection and sorting
      Python
      0102Updated Jun 22, 2022Jun 22, 2022