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    126 repositories

    • infrastructure

      Public
      Infrastructure as Code at UMCCR
      infrastructureawsterraform
      Python
      •8•11•15•3•Updated Feb 3, 2026Feb 3, 2026

    • nemo

      Public
      :tropical_fish: Bioinfo Data Ocean Exploration
      rcancer-genomicsr6
      R
      •
      Other
      •0•0•6•1•Updated Feb 3, 2026Feb 3, 2026

    • htsget-rs

      Public
      A server implementation of the htsget protocol for bioinformatics in Rust
      rustbioinformaticsaws-lambdaserverlesshtsgetbioinfonoodles
      Rust
      •
      MIT License
      •10•49•13•3•Updated Feb 3, 2026Feb 3, 2026

    • k8tre-aws

      Public
      Infrastructure for UMCCR deployment of k8tre
      HCL
      •2•0•0•0•Updated Feb 3, 2026Feb 3, 2026

    • k8tre

      Public
      Application for UMCCR deployment of k8tre
      Python
      •
      MIT License
      •10•0•0•0•Updated Feb 3, 2026Feb 3, 2026

    • orcahouse

      Public
      🐳 UMCCR Pipeline & Workflow Data Warehouse
      HCL
      •0•0•13•0•Updated Feb 2, 2026Feb 2, 2026

    • RNAsum

      Public
      Pipeline for generating RNAseq-based cancer patient reports
      rnaseq-pipelinernaseq-report
      R
      •
      MIT License
      •7•11•18•1•Updated Feb 2, 2026Feb 2, 2026

    • tidywigits

      Public
      🧬✨ Tidy Hartwig WiGiTS pipeline outputs
      cancer-genomicsr6
      R
      •
      Other
      •0•0•17•0•Updated Feb 1, 2026Feb 1, 2026

    • dracarys

      Public
      :dragon_face: DRAGEN workflow tidying :fire:
      cancer-genomicsmultiqcr-packager6qcdragen
      R
      •
      Other
      •0•1•17•0•Updated Feb 1, 2026Feb 1, 2026

    • docker-who

      Public
      A miscellaneous set of UMCCR dockerfiles that don't quite go anywhere else.
      Dockerfile
      •
      MIT License
      •0•3•1•0•Updated Jan 29, 2026Jan 29, 2026

    • gcs-deploy

      Public
      Python
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • steps-s3-copy

      Public
      A Steps orchestration for copying large volumes of S3 objects
      TypeScript
      •
      MIT License
      •0•0•10•0•Updated Jan 29, 2026Jan 29, 2026

    • terraform-provider-remscontent

      Public
      A Terraform provider to manage the *content* of a REMS instance
      Go
      •
      Mozilla Public License 2.0
      •0•0•2•0•Updated Jan 29, 2026Jan 29, 2026

    • libica

      Public
      :snake: Python SDK for Illumina Connected Analytics (ICA) :dragon:
      Python
      •
      MIT License
      •4•6•0•0•Updated Jan 22, 2026Jan 22, 2026

    • sash

      Public
      UMCCR post-processing WGS workflow
      Nextflow
      •
      MIT License
      •0•1•3•1•Updated Jan 21, 2026Jan 21, 2026

    • bolt

      Public
      UMCCR post-processing WGS logic and CLI tool
      Python
      •
      GNU General Public License v3.0
      •1•0•4•1•Updated Jan 21, 2026Jan 21, 2026

    • htsget-deploy

      Public
      Deployment logic for htsget-rs
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jan 13, 2026Jan 13, 2026

    • holmes

      Public
      BAM fingerprint stack
      TypeScript
      •
      MIT License
      •0•3•3•7•Updated Jan 8, 2026Jan 8, 2026

    • rems-umccr

      Public
      A Docker image of REMS built for deployment in AWS and setup for UMCCR configuration
      TypeScript
      •
      MIT License
      •0•0•0•2•Updated Jan 8, 2026Jan 8, 2026

    • orcabus

      Public
      We are moving to https://github.com/orcabus
      Python
      •0•5•25•1•Updated Jan 8, 2026Jan 8, 2026

    • cwl-ica

      Public
      A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
      Common Workflow Language
      •
      MIT License
      •2•13•11•10•Updated Jan 8, 2026Jan 8, 2026

    • orcahouse-doc

      Public
      📘 Warehouse Documentation
      HTML
      •0•0•0•0•Updated Dec 24, 2025Dec 24, 2025

    • genocrate

      Public
      CLI suite for creating/validating genomics datasets
      HTML
      •
      Apache License 2.0
      •0•0•1•0•Updated Dec 12, 2025Dec 12, 2025

    • hmftools

      Public
      UMCCR custom fork of hmftools, mainly for Aarch64 migration testing purposes
      Java
      •
      GNU General Public License v3.0
      •65•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • oncoanalyser-arm64

      Public
      ARM64 experiments for Oncoanalyser
      Nextflow
      •
      MIT License
      •27•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • rportal

      Public
      :crystal_ball: R functionality for UMCCR Data Portal
      R
      •
      Other
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • curation_docs

      Public
      Public documentation for curation team
      0•0•0•0•Updated Nov 27, 2025Nov 27, 2025

    • gene_panels

      Public
      R
      •0•0•1•0•Updated Nov 25, 2025Nov 25, 2025

    • elsa-data-ingest-orcabus

      Public
      TypeScript
      •0•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • homebrew-tap

      Public
      Homebrew Taps for UMCCR
      Ruby
      •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025