Repositories list

• AF3AD

  Public
  Anomaly Factory 3D: A modular framework for controlled geometric pseudo-anomaly synthesis in 3D point clouds.

  Python

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jul 8, 2026Jul 8, 2026

• lr-fak

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• tksm

  Public
  Very modular, very cool long-read transcriptomic simulator

  C++

  •

  MIT License

  •11 fork•88 stars•44 issues•33 pull requests•Updated Aug 11, 2025Aug 11, 2025

• svict

  Public
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA

  structural-variationliquid-biopsypaired-end-sequencing

  structural-variationliquid-biopsypaired-end-sequencing

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •77 forks•2929 stars•1414 issues•00 pull requests•Updated Jun 6, 2024Jun 6, 2024

• scTagger

  Public
  10x single cell short- and long-read RNA sequencing

  Python

  •

  MIT License

  •00 forks•1212 stars•22 issues•00 pull requests•Updated Jan 17, 2024Jan 17, 2024

• calib

  Public
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

  clusteringliquid-biopsytagged-reads+ 2

  clusteringliquid-biopsytagged-readsbarcode-sequencingpaired-end-sequencing

  HTML

  •

  MIT License

  •1111 forks•4040 stars•33 issues•00 pull requests•Updated Jun 6, 2023Jun 6, 2023

• genion

  Public
  GENe fusION

  C++

  •

  MIT License

  •11 fork•88 stars•22 issues•00 pull requests•Updated Jun 6, 2023Jun 6, 2023

• freddie

  Public
  Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing

  Python

  •

  MIT License

  •33 forks•1717 stars•33 issues•00 pull requests•Updated Nov 29, 2022Nov 29, 2022

• sedef

  Public
  Identification of segmental duplications in the genome

  structural-variationsegmental-duplications

  structural-variationsegmental-duplications

  C++

  •

  MIT License

  •77 forks•2929 stars•00 issues•00 pull requests•Updated Mar 1, 2022Mar 1, 2022

• LTR-sim

  Public
  Long transcriptomic reads simulator

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 13, 2021Sep 13, 2021

• circminer

  Public
  A sensitive and fast tool for circular RNA detection from RNA-Seq data

  bioinformaticsrna-seqtranscriptomics+ 1

  bioinformaticsrna-seqtranscriptomicscircrna

  C++

  •

  GNU General Public License v3.0

  •44 forks•1212 stars•44 issues•00 pull requests•Updated May 4, 2021May 4, 2021

• util-progressbar

  Public
  C++

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 24, 2021Mar 24, 2021

• pamir

  Public
  Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals

  structural-variation

  structural-variation

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •44 forks•88 stars•66 issues•11 pull request•Updated Mar 22, 2021Mar 22, 2021

• util-logger

  Public
  C++

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2020Apr 24, 2020

• haslr

  Public
  A fast tool for hybrid genome assembly of long and short reads

  bioinformaticsnanoporegenomics+ 4

  bioinformaticsnanoporegenomicspacbiogenome-assemblylong-readshybrid-assembly

  C++

  •

  GNU General Public License v3.0

  •99 forks•7878 stars•2929 issues•00 pull requests•Updated Apr 22, 2020Apr 22, 2020

• lordfast

  Public
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

  mappinglong-readpacbio+ 2

  mappinglong-readpacbiooxford-nanoporesingle-molecule-sequencing

  C

  •

  GNU General Public License v3.0

  •44 forks•4040 stars•77 issues•00 pull requests•Updated Jul 15, 2019Jul 15, 2019

• lordfast-extra

  Public
  Contains extra information for lordFAST paper

  C++

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 3, 2019Apr 3, 2019