GitHub - osallou/cassiopee: Cassiopee is a Ruby module to search string with exact match or an allowed distance in an other string (or file). An index can optionally be saved for further searches. Exact or approximate search is used in many fields among which bioinformatics to search some patterns in DNA/RNA sequences.The software works on small or large sequences.

Name		Name	Last commit message	Last commit date
bin		bin
doc		doc
lib		lib
tests		tests
Changelog		Changelog
Gemfile		Gemfile
Gemfile.lock		Gemfile.lock
LICENSE		LICENSE
README		README
Rakefile		Rakefile
cassiopee.gemspec		cassiopee.gemspec
setup.rb		setup.rb

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Search an exact or approximate word (hamming or edit distance) in a string.
Support index cache with incremental update for later searches

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Cassiopee is a Ruby module to search string with exact match or an allowed distance in an other string (or file). An index can optionally be saved for further searches. Exact or approximate search is used in many fields among which bioinformatics to search some patterns in DNA/RNA sequences.The software works on small or large sequences.

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