More ergonomic python API for the "patch" tool#14

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kervel wants to merge 36 commits intop2p-ld:mainfrom

Kapernikov:feature/python-patch-object

Commits on Sep 10, 2025

Merge pull request #85 from Kapersyx/fix/inlined-subclasses-with-designates_type
kervel
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feat(runtime): preserve explicit null values for collections and scalar slots; add test for null-valued collections
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chore: rustfmt and clippy fixes; avoid get(0) in tests
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feat(diff): null/missing semantics; add treat_missing_as_null flag; tests and Python API
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feat(diff): single flag treat_missing_as_null; explicit nulls as updates; tests + Python API
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docs: testing guideline to extend existing tests instead of adding redundant ones
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feat(runtime): add NodeIds to LinkMLValue and return PatchTrace from patch(); expose node_id and trace in Python; adjust CLI and tests
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refactor(runtime): implement LinkMLValue-native patch with incremental PatchTrace; remove JSON roundtrip and ID reconciliation; preserve scalar node IDs on in-place updates
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Refactor LinkMLValue builders and reuse in patch; fix fmt/clippy; restore network-based CLI tests; remove dead code
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fmt: apply rustfmt after refactor; clippy clean excluding linkml_meta
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diff: inline LinkMLValue builder calls; remove thin wrappers and unused imports
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diff: make patch panic-safe; return LResult and propagate errors instead of expect/panic; update tests, CLI, and Python bindings
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Merge pull request #4 from Kapernikov/feat/null-collections
kervel
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Merge origin/main into feat/node-ids-patch-trace-clean: integrate LinkMLValue::Null; add node_id to Null; handle Null in to_json, traversal, and parsing; resolve conflicts
kervel
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tests: update for Null variant; use JSON roundtrip instead of constructing Null directly; handle Null in trace traversal
kervel
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Commits on Sep 11, 2025

Commits on Sep 12, 2025

Commits on Sep 14, 2025

Commits on Sep 17, 2025

Commits on Sep 18, 2025

Fix slot ranges not computed correctly due to two separate bugs: a cross-namespace bug (we should not use a global uri to curi converter anymore since every schema has its own prefix map) and a mer…
Frank Dekervel
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format
Frank Dekervel
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Fix slot ranges not computed correctly due to two separate bugs: a cross-namespace bug (we should not use a global uri to curi converter anymore since every schema has its own prefix map) and a mer…
Frank Dekervel
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Add overwrite_except_none merge strategy for SlotDefinition
Frank Dekervel
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Use schema-local converters for slot usage overrides
Frank Dekervel
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Merge branch 'nfix-no-global-converter'
Frank Dekervel
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Commits on Sep 22, 2025

Return Python patch result object
Frank Dekervel
committed