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Revise biosample of submitted mpox with raw reads

TODO for Pathoplexus

waiting for propagation to NCBI

waiting to be processed

Status: Open.

#210 In pathoplexus/ena-submission;

· anna-parker opened on Jan 26, 2026

Revoke/Suppress 98 mpox Philippines sequences

waiting on ENA

Status: Open.

#185 In pathoplexus/ena-submission;

· anna-parker opened on Nov 17, 2025

Programmatic email to ENA of stuck/delayed submissions

TODO for Pathoplexus

Status: Open.

#153 In pathoplexus/ena-submission;

· corneliusroemer opened on Oct 10, 2025

Suppress sequence on INSDC

waiting on ENA

Status: Open.

#152 In pathoplexus/ena-submission;

· anna-parker opened on Oct 6, 2025

Add gisaid accession to the assembly

Status: Open.

#92 In pathoplexus/ena-submission;

· anna-parker opened on Jul 16, 2025

Submit sequences with (structured) GISAID crossref accessions

Status: Open.

#86 In pathoplexus/ena-submission;

· corneliusroemer opened on Jul 14, 2025

Get db_xref into source qualifier of nucleotide file

TODO for Pathoplexus

Status: Open.

#85 In pathoplexus/ena-submission;

· corneliusroemer opened on Jul 14, 2025

Assemblies not propagated to NCBI since March 20

waiting for propagation to NCBI

waiting on ENA

Status: Open.

#80 In pathoplexus/ena-submission;

· corneliusroemer opened on Jul 8, 2025

Coverage/Program/Platform not output into flatfiles despite being mandatory

Status: Open.

#76 In pathoplexus/ena-submission;

· corneliusroemer opened on Jul 3, 2025