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Is there a set-valued estimate of which SNP is causal like SuSiE that I can get from the verbvs posterior?

Status: Open.

#46 In pcarbo/varbvs;

· garyzhubc opened on Aug 2, 2025

What is the value of prior log-odds by default?

Status: Open.

#45 In pcarbo/varbvs;

· garyzhubc opened on Apr 12, 2025

Is it recommended to standardize data matrix X before feeding into varbvs?

Status: Open.

#44 In pcarbo/varbvs;

· garyzhubc opened on Aug 1, 2024

Is it better to use PIP or Bayes factor for variable selection?

Status: Open.

#43 In pcarbo/varbvs;

· garyzhubc opened on Jun 25, 2024

Scale invariance

Status: Open.

#42 In pcarbo/varbvs;

· nlapier2 opened on Jan 22, 2024

Does the size of the PIP matters? Is it worth reporting if I get a bunch of small PIP values? 0.02 or so.

Status: Open.

#41 In pcarbo/varbvs;

· garyzhubc opened on Dec 12, 2023

How to plot PIP in log scale?

Status: Open.

#40 In pcarbo/varbvs;

· garyzhubc opened on Dec 12, 2023

Shall I put the entire chromosome in varbvs given that it's computationally feasible to do so?

Status: Open.

#39 In pcarbo/varbvs;

· garyzhubc opened on Dec 12, 2023

How to sample from the posterior?

Status: Open.

#35 In pcarbo/varbvs;

· garyzhubc opened on Jul 20, 2023

Do you recommend pruning SNPs that are in linkage disequilibrium before putting into varbvs?

Status: Open.

#34 In pcarbo/varbvs;

· garyzhubc opened on Feb 23, 2021

Parallel execution of loop over grid of "logodds"

Status: Open.

#28 In pcarbo/varbvs;

· fmorgante opened on Sep 17, 2020

show inference for pi in print.summary.varbvs

documentation

enhancement

Status: Open.

#24 In pcarbo/varbvs;

· timflutre opened on Jul 5, 2018