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Observation builder#22

Merged
Gabrielstav merged 23 commits into
mainfrom
observation_builder
May 21, 2026
Merged

Observation builder#22
Gabrielstav merged 23 commits into
mainfrom
observation_builder

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@Gabrielstav
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  • Observation builder & tests.

Other updates:

  • Foreign keys published by ConditionOccurrence, consumed by Measurement builder methods to link to cancer type (per cdm oncology guidelines).
  • Harmonized tumor types and target biomarker files.
  • Natural keys owned by domain models, used bu builders to generate UIDs.
  • Deterministic sorting of collection data before hydration, processors no longer need to care about sorting.
  • Base class checks for NK collisions.
  • Not Evaluable tumor assessments emitted from MeasurementBuilder.
  • Mapping files updated.
  • ClinicalBenefit singleton with week field instead of separate fields on Patient.

Gabrielstav added 23 commits May 6, 2026 16:17
…re hydration, processors no longer have to care
…r records) can link back to primary cancer entry for that patient, as per cdm oncologoy guidelines
@Gabrielstav Gabrielstav merged commit 52aa7ee into main May 21, 2026
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@Gabrielstav Gabrielstav deleted the observation_builder branch May 21, 2026 12:27
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