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@pdxgx

pdxgx

Computational biology software developed in collaborations led by Abhi Nellore and Reid Thompson

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  1. neoepiscope neoepiscope Public

    predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data

    Python 27 17

  2. pepsickle pepsickle Public

    A context aware tool for proteasomal cleavage predictions

    Python 17 2

  3. covid19 covid19 Public

    covid19 exploration

    R 9 4

  4. ri-tests ri-tests Public

    Supporting materials for "Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads"

    R 5

  5. immunorx_response_pipeline immunorx_response_pipeline Public

    Python 4 2

  6. pepsickle-paper pepsickle-paper Public

    scripts for data pulls and analysis related to the pepsickle proteasomal cleavage paper

    Python 3 1

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