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Pull request overview
This PR adds a new vignette documenting the creation of the ADNV (Nervous System Analysis Dataset) with a focus on UPSIT (University of Pennsylvania Smell Identification Test) olfactory function assessments.
Changes:
- Created comprehensive vignette (
vignettes/adnv.Rmd) demonstrating the workflow for building ADNV datasets, including UPSIT score to percentile conversion and criterion flag derivations - Updated the WORDLIST to include technical terms and proper nouns used in the new vignette
Reviewed changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 1 comment.
| File | Description |
|---|---|
| vignettes/adnv.Rmd | New vignette providing step-by-step guidance for creating ADNV datasets with UPSIT-specific derivations |
| inst/WORDLIST | Added medical/technical terms (α-synuclein, ADNV, AVALC, CSF, Lewy, 10th, Mastenbroek) for spell-checking |
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@mjiang-lilly, could you please approve this PR? |
meilinjiang
approved these changes
Jan 28, 2026
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Thank you for your Pull Request! We have developed this task checklist from the Development Process Guide to help with the final steps of the process. Completing the below tasks helps to ensure our reviewers can maximize their time on your code as well as making sure the admiral family codebase remains robust and consistent.
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mainbranch until you have checked off each task.styler::style_file()to style R and Rmd filesdevtools::document()so all.Rdfiles in themanfolder and theNAMESPACEfile in the project root are updated appropriatelyNEWS.mdunder the header# admiral<ext> (development version)if the changes pertain to a user-facing function (i.e. it has an@exporttag) or documentation aimed at users (rather than developers)pkgdown::build_site()and check that all affected examples are displayed correctly and that all new functions occur on the Reference page.lintr::lint_package()R CMD checklocally and address all errors and warnings -devtools::check()