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@phesketh-igtp phesketh-igtp released this 22 Apr 06:29
· 255 commits to main since this release
v0.2.0
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Learn about vigilant mode.

This is a functioning version of the RutiSeq-nf workflow. While it still does not perform everything that is planned, the principle workflow is performed and can be executed successfully.

Fixed:

  • Conda environment compiling corrected, although TB-Profiler can create issues with BCFtools (which needs to be downgraded to v1.12). Manual correction is possible when this occurs.
  • TB-profiler updated to newest version (v6.6.3) to comply with most recent TBDB and WHO database (WHO-V2-Strict, 2025-04-22)
  • Path to matrix for data delivery preparation

Changed:

  • Added flags to shell scripts (bin/shell/create-variable-region-nexus.sh; bin/shell/create-variable.region.nexus.w.MRCA.sh)

To Do:

  • Update docker and singularity/apptainer containers using seqera container tool
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