Feature/multi sample classification

[pirovc]

added --batch-reads option

[codecov-commenter]

⚠️ Please install the to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

❌ Patch coverage is 88.98305% with 52 lines in your changes missing coverage. Please review.
✅ Project coverage is 89.25%. Comparing base (af00a99) to head (addbc65).
⚠️ Report is 150 commits behind head on dev.

Files with missing lines	Patch %	Lines
src/ganon-classify/GanonClassify.cpp	92.88%	20 Missing ⚠️
...c/ganon-classify/include/ganon-classify/Config.hpp	45.45%	12 Missing ⚠️
src/ganon/classify.py	72.72%	6 Missing ⚠️
src/ganon/config.py	53.84%	6 Missing ⚠️
src/ganon/reassign.py	94.73%	6 Missing ⚠️
src/ganon-classify/CommandLineParser.cpp	75.00%	1 Missing ⚠️
src/ganon/util.py	80.00%	1 Missing ⚠️
❗ Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files

@@             Coverage Diff             @@
##              dev     #312       +/-   ##
===========================================
+ Coverage   77.66%   89.25%   +11.58%     
===========================================
  Files          22       24        +2     
  Lines        2512     3658     +1146     
===========================================
+ Hits         1951     3265     +1314     
+ Misses        561      393      -168     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.