Brava 2 integration

README.md

@@ -49,6 +49,26 @@ Finally, you can run the images with:
 
 The regular docker-compose.yml is reserved for production deployments, and will always use the latest images
 
+## Configuration
+Configuration for this app is done via the `resources/application.properties` file.
+
+### BRAVA
+Configuring the BRAVA tool is important because you can define supported BrAPI versions and where to get the schema files
+for each BrAPI module via:
+
+```
+# Additional supported versions can be added here using commas like: 2.1,2.0,1.3, etc
+brapi.schema.versions=2.1
+
+# Here use '_' for all .'s in versions of BrAPI to load properly
+brapi.schema.urls.v2_1.core=https://api.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Core/2.1/swagger.yaml?resolved=false&flatten=false
+brapi.schema.urls.v2_1.germplasm=https://api.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Germplasm/2.1/swagger.yaml?resolved=false&flatten=false
+brapi.schema.urls.v2_1.genotyping=https://api.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Genotyping/2.1/swagger.yaml?resolved=false&flatten=false
+brapi.schema.urls.v2_1.phenotyping=https://api.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Phenotyping/2.1/swagger.yaml?resolved=false&flatten=false
+```
+
+On startup the system will load all the supported versions and URLs.
+
 ## Releases
 Releases will trigger an action to build and upload an image to Docker Hub
 

build.gradle

@@ -19,12 +19,14 @@ repositories {
 }
 
 ext {
-    usecaseinatorVersion = '1.0.3'
+    usecaseinatorVersion = '1.0.4'
 }
 
 dependencies {
     implementation "org.brapi:use-caseinator:${usecaseinatorVersion}"
+    implementation "org.brapi.brapi-schema-tools:brapi-schema-tools-analyse:0.68.0"
 
+    implementation 'com.atlassian.oai:swagger-request-validator-core:2.44.1'
     implementation "org.springframework.boot:spring-boot-starter-web"
 
     compileOnly "org.projectlombok:lombok:1.18.34"

src/main/java/org/bravatools/BravaToolsBackend.java

@@ -1,11 +1,9 @@
 package org.bravatools;
 
 import org.springframework.boot.SpringApplication;
-import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
 import org.springframework.boot.autoconfigure.SpringBootApplication;
 
 @SpringBootApplication
-@EnableAutoConfiguration
 public class BravaToolsBackend {
     public static void main(String[] args) {
         SpringApplication.run(BravaToolsBackend.class, args);

src/main/java/org/bravatools/brava/controller/ValidationController.java

@@ -0,0 +1,32 @@
+package org.bravatools.brava.controller;
+
+import com.fasterxml.jackson.core.JsonProcessingException;
+import lombok.extern.slf4j.Slf4j;
+import org.bravatools.brava.model.ValidationRequest;
+import org.bravatools.brava.model.ValidationResponse;
+import org.bravatools.brava.service.ValidationService;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.http.ResponseEntity;
+import org.springframework.web.bind.annotation.*;
+
+@RestController
+@RequestMapping("/validator")
+@Slf4j
+public class ValidationController {
+
+    private ValidationService validationService;
+
+    @Autowired
+    public ValidationController(ValidationService validationService) {
+        this.validationService = validationService;
+    }
+
+    @PostMapping("/validateall")
+    public ResponseEntity<ValidationResponse> availableBrapps(
+            @RequestBody ValidationRequest validationRequest
+    ) throws JsonProcessingException {
+        ValidationResponse result = validationService.validateAll(validationRequest);
+
+        return ResponseEntity.ok(result);
+    }
+}

src/main/java/org/bravatools/brava/model/BrAPIEntity.java

@@ -0,0 +1,14 @@
+package org.bravatools.brava.model;
+
+import lombok.Getter;
+import lombok.Setter;
+
+import java.util.List;
+
+@Getter
+@Setter
+public class BrAPIEntity {
+    private String name;
+    private List<TestedEndpoint> testedEndpoints;
+    private ValidationSuccessLevel validationSuccessLevel = ValidationSuccessLevel.SUCCESS;
+}

src/main/java/org/bravatools/brava/model/TestedEndpoint.java

@@ -0,0 +1,20 @@
+package org.bravatools.brava.model;
+
+
+import com.atlassian.oai.validator.model.Request;
+import lombok.Getter;
+import lombok.Setter;
+
+import java.util.List;
+
+@Getter
+@Setter
+public class TestedEndpoint {
+    private String path;
+    private Request.Method method;
+    private String summaryMessage;
+    private long responseTime;
+    private int statusCode;
+    private List<Validation> validations;
+    private ValidationSuccessLevel validationSuccessLevel = ValidationSuccessLevel.SUCCESS;
+}

src/main/java/org/bravatools/brava/model/Validation.java

@@ -0,0 +1,12 @@
+package org.bravatools.brava.model;
+
+import lombok.Getter;
+import lombok.Setter;
+
+@Getter
+@Setter
+public class Validation {
+    private String message;
+    private ValidationSuccessLevel validationSuccessLevel =  ValidationSuccessLevel.WARNING;
+
+}

src/main/java/org/bravatools/brava/model/ValidationRequest.java

@@ -0,0 +1,12 @@
+package org.bravatools.brava.model;
+
+import lombok.Getter;
+import lombok.Setter;
+
+@Getter
+@Setter
+public class ValidationRequest {
+    private String serverUrl;
+    private String version;
+    private String token;
+}

src/main/java/org/bravatools/brava/model/ValidationResponse.java

@@ -0,0 +1,12 @@
+package org.bravatools.brava.model;
+
+import lombok.Getter;
+import lombok.Setter;
+
+import java.util.List;
+
+@Getter
+@Setter
+public class ValidationResponse {
+    List<BrAPIEntity> entities;
+}

src/main/java/org/bravatools/brava/model/ValidationSuccessLevel.java

@@ -0,0 +1,7 @@
+package org.bravatools.brava.model;
+
+public enum ValidationSuccessLevel {
+    SUCCESS,
+    WARNING,
+    ERROR
+}

src/main/java/org/bravatools/brava/model/spec/SupportedSpecs.java

@@ -0,0 +1,12 @@
+package org.bravatools.brava.model.spec;
+
+import lombok.Getter;
+import lombok.Setter;
+
+import java.util.List;
+
+@Getter
+@Setter
+public class SupportedSpecs {
+    private List<Version> versions;
+}

src/main/java/org/bravatools/brava/model/spec/Version.java

@@ -0,0 +1,13 @@
+package org.bravatools.brava.model.spec;
+
+import lombok.Getter;
+import lombok.Setter;
+
+import java.util.List;
+
+@Getter
+@Setter
+public class Version {
+    private String name;
+    private List<String> moduleUrls;
+}