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* Do not hardcode file paths * Add basic tests for slice compilation * Fixed SLICE code installation issues * Include cpp files in manifest * Add GSL dependency to Travis * Add correct GSL dependency to Travis * Add correct GSL dependency (for Trusty) to Travis * Specify to use C++11 * Fix pylint warnings * Travis test on OSX as well as linux * Travis doesn't support python on MacOS
* SLICE-dev: Fix incorrect syntax for checking file stream errors Fixed SLICE code installation issues
* Do not hardcode file paths * Add basic tests for slice compilation * Fixed SLICE code installation issues * Include cpp files in manifest * Add GSL dependency to Travis * Add correct GSL dependency to Travis * Add correct GSL dependency (for Trusty) to Travis * Specify to use C++11 * Fix pylint warnings * Travis test on OSX as well as linux * Travis doesn't support python on MacOS
* 'SLICE-fix' of github.com:rbeagrie/gamtools: Added genome-length option to SLICE Fix incorrect syntax for checking file stream errors Fixed SLICE code installation issues Travis doesn't support python on MacOS Travis test on OSX as well as linux Fix pylint warnings Specify to use C++11 Add correct GSL dependency (for Trusty) to Travis Add correct GSL dependency to Travis Add GSL dependency to Travis Include cpp files in manifest Fixed SLICE code installation issues Add basic tests for slice compilation Do not hardcode file paths SLICE working through python with hard-coded parameters Rename some code files Importing SLICE library Preparing to add slice cpp files Started working on including SLICE code
* v2.0.0-dev: Add cpp files to gitignore Calculate coverage in bp rather than reads for subsequent thresholding (#32)
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## master #36 +/- ##
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+ Coverage 42.42% 44.11% +1.68%
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Files 23 24 +1
Lines 1466 1546 +80
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+ Hits 622 682 +60
- Misses 844 864 +20 ☔ View full report in Codecov by Sentry. |
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Implement SLICE analysis code in GAMtools.