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@stschiff stschiff commented Jan 6, 2026

I've added the license file fields and the additional reference assembly fields for genotype data to the Yaml file structure.

@stschiff stschiff marked this pull request as ready for review January 6, 2026 12:41
@stschiff stschiff requested a review from nevrome January 6, 2026 12:41
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codecov bot commented Jan 6, 2026

Codecov Report

❌ Patch coverage is 69.11765% with 21 lines in your changes missing coverage. Please review.
✅ Project coverage is 56.89%. Comparing base (8865d3d) to head (f3f2ea9).

Files with missing lines Patch % Lines
src/Poseidon/Package.hs 50.00% 10 Missing and 2 partials ⚠️
src/Poseidon/CLI/Forge.hs 70.00% 6 Missing ⚠️
src/Poseidon/CLI/OptparseApplicativeParsers.hs 0.00% 2 Missing ⚠️
src/Poseidon/GenotypeData.hs 95.23% 1 Missing ⚠️
Additional details and impacted files
@@                Coverage Diff                 @@
##           Schema_300_dev     #363      +/-   ##
==================================================
+ Coverage           56.83%   56.89%   +0.05%     
==================================================
  Files                  33       33              
  Lines                4993     5043      +50     
  Branches              546      548       +2     
==================================================
+ Hits                 2838     2869      +31     
- Misses               1609     1626      +17     
- Partials              546      548       +2     

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Looks good to me 👍

instance FromJSON LicenseSpec where
parseJSON = withObject "LicenseSpec" $ \v -> LicenseSpec
<$> v .: "name"
<*> v .: "url"
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Above you define licenseURL :: Maybe String, but here you use v .: "url". I'm surprised this even compiles. Should be .:?, right?

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3 participants